PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57051-57100 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 85.1852 | 8 | 1 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 50.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.1176 | 100.0000 | 88.8889 | 81.2500 | 15 | 0 | 16 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 75.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 94.1176 | 93.3333 | 94.9153 | 96.5698 | 56 | 4 | 56 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.0177 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m1_e0 | * | 94.1176 | 92.3077 | 96.0000 | 96.2179 | 24 | 2 | 24 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | het | 94.1176 | 88.8889 | 100.0000 | 96.9582 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | * | 94.1176 | 90.5660 | 97.9592 | 93.5948 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | * | 94.1176 | 90.5660 | 97.9592 | 94.3353 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | * | 94.1176 | 90.5660 | 97.9592 | 94.4758 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.2330 | 8 | 1 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 95.1351 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.1176 | 94.1176 | 94.1176 | 99.4642 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.9825 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.5975 | 8 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 96.6777 | 8 | 1 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 97.0113 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.8571 | 8 | 1 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.2185 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.6757 | 8 | 1 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1875 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.2435 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.5801 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.1353 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 91.9450 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 100.0000 | 88.8889 | 97.0492 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.9697 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 96.5278 | 8 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.1176 | 94.1176 | 94.1176 | 90.5556 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 42.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 65.3846 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.7591 | 40 | 5 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 43.7500 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 94.9640 | 8 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||