PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56251-56300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6115 | 90.6040 | 96.8254 | 76.2264 | 135 | 14 | 122 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6118 | 90.0651 | 97.4492 | 65.8974 | 1659 | 183 | 1872 | 49 | 41 | 83.6735 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.6119 | 88.1549 | 99.7890 | 35.1573 | 387 | 52 | 473 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | homalt | 93.6134 | 89.6018 | 98.0010 | 59.6110 | 9496 | 1102 | 9462 | 193 | 170 | 88.0829 | |
| jli-custom | INDEL | D6_15 | HG002compoundhet | het | 93.6150 | 96.6121 | 90.7982 | 65.4935 | 827 | 29 | 819 | 83 | 81 | 97.5904 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 93.6170 | 95.6522 | 91.6667 | 97.1049 | 44 | 2 | 44 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.6170 | 95.6522 | 91.6667 | 89.1892 | 22 | 1 | 22 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 97.7046 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 43.9024 | 22 | 3 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.6170 | 100.0000 | 88.0000 | 87.0466 | 22 | 0 | 22 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 98.1023 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.6170 | 91.6667 | 95.6522 | 76.7677 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.2381 | 22 | 3 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 97.8444 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 98.7254 | 22 | 3 | 22 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 96.9529 | 22 | 3 | 22 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.4545 | 22 | 3 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 98.1673 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 44.1860 | 22 | 3 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.6170 | 91.6667 | 95.6522 | 75.0000 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 93.6170 | 91.6667 | 95.6522 | 86.7816 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 89.7959 | 97.7778 | 23.7288 | 44 | 5 | 44 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | hetalt | 93.6170 | 88.0000 | 100.0000 | 84.7826 | 110 | 15 | 112 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.2381 | 22 | 3 | 23 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.6170 | 97.7778 | 89.7959 | 82.5000 | 44 | 1 | 44 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6170 | 100.0000 | 88.0000 | 95.8882 | 1 | 0 | 44 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 97.7390 | 22 | 3 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 26.6667 | 22 | 3 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 26.6667 | 22 | 3 | 22 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.2381 | 22 | 3 | 23 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 93.6170 | 91.6667 | 95.6522 | 91.4019 | 176 | 16 | 176 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 98.2642 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 97.9068 | 22 | 3 | 22 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 46.5116 | 22 | 3 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | het | 93.6184 | 92.4290 | 94.8387 | 92.0082 | 293 | 24 | 294 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | * | 93.6190 | 92.3632 | 94.9094 | 62.9257 | 27672 | 2288 | 27556 | 1478 | 1464 | 99.0528 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6192 | 89.9522 | 97.5980 | 66.0369 | 752 | 84 | 772 | 19 | 15 | 78.9474 | |
| jli-custom | INDEL | * | map_l100_m1_e0 | hetalt | 93.6206 | 88.7097 | 99.1071 | 86.4571 | 110 | 14 | 111 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | het | 93.6224 | 96.4339 | 90.9701 | 78.1195 | 29530 | 1092 | 29276 | 2906 | 248 | 8.5341 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 93.6255 | 92.5197 | 94.7581 | 89.8693 | 470 | 38 | 470 | 26 | 18 | 69.2308 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.6306 | 88.0240 | 100.0000 | 68.6848 | 147 | 20 | 150 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6307 | 91.1655 | 96.2330 | 58.6113 | 2198 | 213 | 2197 | 86 | 83 | 96.5116 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | het | 93.6309 | 97.7486 | 89.8461 | 85.7790 | 12591 | 290 | 12494 | 1412 | 84 | 5.9490 | |
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | het | 93.6315 | 98.5185 | 89.2063 | 59.4595 | 399 | 6 | 281 | 34 | 31 | 91.1765 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.6324 | 98.9002 | 88.8973 | 60.3677 | 1169 | 13 | 1169 | 146 | 145 | 99.3151 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.6340 | 88.9169 | 98.8796 | 87.9595 | 706 | 88 | 706 | 8 | 3 | 37.5000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 93.6362 | 98.9619 | 88.8545 | 93.9851 | 286 | 3 | 287 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | * | map_l100_m0_e0 | * | 93.6372 | 97.7607 | 89.8474 | 89.5254 | 1528 | 35 | 1531 | 173 | 12 | 6.9364 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.6375 | 98.9848 | 88.8383 | 60.2115 | 1170 | 12 | 1170 | 147 | 145 | 98.6395 | |