PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54651-54700 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | het | 92.4908 | 98.8170 | 86.9258 | 89.0233 | 1253 | 15 | 1230 | 185 | 49 | 26.4865 | |
| jpowers-varprowl | SNP | ti | HG002compoundhet | * | 92.4932 | 93.2258 | 91.7721 | 42.7151 | 16294 | 1184 | 16396 | 1470 | 904 | 61.4966 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4949 | 86.3386 | 99.5964 | 37.6133 | 2351 | 372 | 2468 | 10 | 10 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 92.4953 | 90.6250 | 94.4444 | 89.0720 | 116 | 12 | 119 | 7 | 5 | 71.4286 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4957 | 86.7773 | 99.0210 | 60.7081 | 12817 | 1953 | 12846 | 127 | 18 | 14.1732 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.4964 | 96.7963 | 88.5622 | 52.1231 | 5499 | 182 | 5482 | 708 | 693 | 97.8814 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4977 | 97.4798 | 88.0000 | 79.7980 | 967 | 25 | 968 | 132 | 9 | 6.8182 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.4984 | 86.7234 | 99.0973 | 67.6373 | 24247 | 3712 | 24262 | 221 | 75 | 33.9367 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.4986 | 87.0629 | 98.6582 | 85.3332 | 27114 | 4029 | 27131 | 369 | 118 | 31.9783 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.4986 | 87.0629 | 98.6582 | 85.3332 | 27114 | 4029 | 27131 | 369 | 118 | 31.9783 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | het | 92.5000 | 88.0952 | 97.3684 | 82.6879 | 111 | 15 | 148 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5000 | 86.0465 | 100.0000 | 77.2080 | 74 | 12 | 80 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5000 | 88.0952 | 97.3684 | 99.3838 | 37 | 5 | 37 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 95.3349 | 37 | 6 | 39 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.8742 | 37 | 6 | 37 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 95.5982 | 37 | 6 | 39 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m0_e0 | * | 92.5000 | 94.8718 | 90.2439 | 97.6565 | 74 | 4 | 74 | 8 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.0057 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.5017 | 90.8883 | 94.1735 | 55.0486 | 3571 | 358 | 3572 | 221 | 201 | 90.9502 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002complexvar | * | 92.5060 | 86.7938 | 99.0230 | 59.4097 | 28957 | 4406 | 28886 | 285 | 203 | 71.2281 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | het | 92.5065 | 93.2292 | 91.7949 | 87.1287 | 179 | 13 | 179 | 16 | 2 | 12.5000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5067 | 90.7170 | 94.3684 | 38.1735 | 14297 | 1463 | 25772 | 1538 | 1472 | 95.7087 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.5093 | 87.1670 | 98.5493 | 64.5442 | 1963 | 289 | 1970 | 29 | 7 | 24.1379 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | * | 92.5116 | 88.2122 | 97.2516 | 82.2846 | 449 | 60 | 460 | 13 | 5 | 38.4615 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.5120 | 87.0957 | 98.6467 | 70.2422 | 5386 | 798 | 5394 | 74 | 11 | 14.8649 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.5121 | 98.4899 | 87.2184 | 86.1606 | 4174 | 64 | 3910 | 573 | 37 | 6.4572 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | het | 92.5133 | 91.8831 | 93.1522 | 87.8339 | 849 | 75 | 857 | 63 | 12 | 19.0476 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 92.5136 | 96.5980 | 88.7606 | 66.4930 | 17548 | 618 | 17524 | 2219 | 2149 | 96.8454 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 92.5136 | 96.5980 | 88.7606 | 66.4930 | 17548 | 618 | 17524 | 2219 | 2149 | 96.8454 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.5148 | 92.3810 | 92.6491 | 58.3237 | 679 | 56 | 668 | 53 | 51 | 96.2264 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.5150 | 94.1534 | 90.9326 | 70.9811 | 2013 | 125 | 2106 | 210 | 201 | 95.7143 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.5151 | 89.5327 | 95.7031 | 72.8238 | 479 | 56 | 490 | 22 | 20 | 90.9091 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | het | 92.5169 | 91.7219 | 93.3259 | 87.8250 | 831 | 75 | 839 | 60 | 12 | 20.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.5170 | 90.9118 | 94.1799 | 42.0147 | 6072 | 607 | 10761 | 665 | 217 | 32.6316 | |
| jlack-gatk | INDEL | D6_15 | map_siren | het | 92.5170 | 97.1429 | 88.3117 | 88.1992 | 272 | 8 | 272 | 36 | 3 | 8.3333 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | * | 92.5185 | 90.0000 | 95.1819 | 96.3145 | 9 | 1 | 968 | 49 | 5 | 10.2041 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.5203 | 90.3553 | 94.7917 | 56.5611 | 178 | 19 | 182 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5212 | 89.2857 | 96.0000 | 89.9194 | 25 | 3 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.5216 | 89.4845 | 95.7722 | 64.1176 | 3489 | 410 | 3330 | 147 | 104 | 70.7483 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5220 | 86.1761 | 99.8768 | 41.7921 | 773 | 124 | 811 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | * | 92.5221 | 89.9049 | 95.2961 | 83.9996 | 27519 | 3090 | 27532 | 1359 | 751 | 55.2612 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.5234 | 86.7470 | 99.1239 | 87.6564 | 792 | 121 | 792 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.5242 | 92.9345 | 92.1175 | 55.9701 | 12785 | 972 | 12446 | 1065 | 828 | 77.7465 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.5242 | 92.9345 | 92.1175 | 55.9701 | 12785 | 972 | 12446 | 1065 | 828 | 77.7465 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5252 | 93.1034 | 91.9540 | 99.8905 | 81 | 6 | 80 | 7 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | * | 92.5287 | 97.2810 | 88.2192 | 97.2498 | 322 | 9 | 322 | 43 | 4 | 9.3023 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.5301 | 86.8778 | 98.9691 | 90.9683 | 192 | 29 | 192 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | het | 92.5331 | 98.8057 | 87.0093 | 88.9275 | 1241 | 15 | 1219 | 182 | 48 | 26.3736 | |