PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54501-54550 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 96.0630 | 6 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.0811 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.3077 | 90.0000 | 94.7368 | 99.2146 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.5943 | 18 | 3 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.3574 | 18 | 3 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.0355 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 84.3373 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 92.2581 | 12 | 2 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 92.3109 | 86.3636 | 99.1379 | 88.0903 | 114 | 18 | 115 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3110 | 86.1669 | 99.3986 | 32.5999 | 1115 | 179 | 1157 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | het | 92.3125 | 91.6921 | 92.9413 | 85.1008 | 6622 | 600 | 6623 | 503 | 271 | 53.8767 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 92.3139 | 88.0597 | 97.0000 | 87.0634 | 59 | 8 | 97 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.3235 | 86.4435 | 99.0619 | 31.9285 | 1575 | 247 | 1584 | 15 | 15 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | homalt | 92.3286 | 87.1951 | 98.1043 | 88.9817 | 143 | 21 | 207 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.3310 | 91.5713 | 93.1034 | 71.6850 | 880 | 81 | 837 | 62 | 57 | 91.9355 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.3313 | 99.3492 | 86.2394 | 78.7375 | 916 | 6 | 915 | 146 | 129 | 88.3562 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.3314 | 91.1111 | 93.5849 | 51.5539 | 246 | 24 | 248 | 17 | 12 | 70.5882 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | * | 92.3351 | 89.3573 | 95.5182 | 36.0215 | 7842 | 934 | 7843 | 368 | 366 | 99.4565 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 92.3351 | 94.1818 | 90.5594 | 88.7090 | 259 | 16 | 259 | 27 | 5 | 18.5185 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.3366 | 91.0042 | 93.7086 | 71.1832 | 435 | 43 | 566 | 38 | 38 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 92.3386 | 88.6364 | 96.3636 | 92.4554 | 39 | 5 | 53 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.3387 | 87.4046 | 97.8632 | 82.4456 | 458 | 66 | 458 | 10 | 2 | 20.0000 | |
| egarrison-hhga | INDEL | D6_15 | * | het | 92.3399 | 97.9037 | 87.3745 | 56.6927 | 11349 | 243 | 11924 | 1723 | 1642 | 95.2989 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.3401 | 86.1140 | 99.5366 | 37.1153 | 3293 | 531 | 3437 | 16 | 16 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_siren | het | 92.3406 | 86.3635 | 99.2066 | 74.9301 | 78583 | 12408 | 78653 | 629 | 157 | 24.9603 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.3441 | 90.1387 | 94.6602 | 59.6342 | 585 | 64 | 585 | 33 | 29 | 87.8788 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.3449 | 94.3042 | 90.4654 | 62.2051 | 1606 | 97 | 1594 | 168 | 164 | 97.6190 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3454 | 90.6386 | 94.1176 | 50.5132 | 2498 | 258 | 2496 | 156 | 154 | 98.7179 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.3469 | 85.7820 | 100.0000 | 39.8671 | 181 | 30 | 181 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.3491 | 87.7265 | 97.4860 | 57.2867 | 4260 | 596 | 4343 | 112 | 72 | 64.2857 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | * | 92.3506 | 90.1368 | 94.6759 | 61.0439 | 27005 | 2955 | 26887 | 1512 | 1502 | 99.3386 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | het | 92.3518 | 98.9247 | 86.5979 | 88.3812 | 1196 | 13 | 1176 | 182 | 48 | 26.3736 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3526 | 88.8889 | 96.0973 | 56.8254 | 1184 | 148 | 1699 | 69 | 59 | 85.5072 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3529 | 89.7315 | 95.1320 | 41.7997 | 2473 | 283 | 2775 | 142 | 134 | 94.3662 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | het | 92.3544 | 87.8737 | 97.3167 | 82.8441 | 41211 | 5687 | 41200 | 1136 | 70 | 6.1620 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | het | 92.3597 | 87.7863 | 97.4359 | 83.4921 | 115 | 16 | 152 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | * | 92.3600 | 96.3299 | 88.7044 | 82.4713 | 30683 | 1169 | 30289 | 3857 | 284 | 7.3632 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.3613 | 88.6473 | 96.4000 | 70.3264 | 367 | 47 | 482 | 18 | 17 | 94.4444 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.3641 | 88.5246 | 96.5517 | 90.5383 | 54 | 7 | 56 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.3674 | 89.4737 | 95.4545 | 87.9781 | 119 | 14 | 105 | 5 | 2 | 40.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3676 | 91.1466 | 93.6218 | 50.4528 | 2512 | 244 | 2510 | 171 | 166 | 97.0760 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.3729 | 88.2591 | 96.8889 | 46.8085 | 218 | 29 | 436 | 14 | 14 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.3763 | 96.3910 | 88.6827 | 87.4183 | 641 | 24 | 478 | 61 | 53 | 86.8852 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | * | 92.3781 | 89.7690 | 95.1434 | 82.0623 | 9950 | 1134 | 9952 | 508 | 276 | 54.3307 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3783 | 86.4597 | 99.1667 | 88.2132 | 1309 | 205 | 1309 | 11 | 8 | 72.7273 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3785 | 86.4597 | 99.1673 | 87.8741 | 1309 | 205 | 1310 | 11 | 4 | 36.3636 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | het | 92.3786 | 97.8009 | 87.5259 | 78.5190 | 1690 | 38 | 1691 | 241 | 200 | 82.9876 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.3787 | 95.5903 | 89.3758 | 38.2787 | 672 | 31 | 673 | 80 | 79 | 98.7500 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | het | 92.3788 | 96.1538 | 88.8889 | 94.1727 | 75 | 3 | 72 | 9 | 1 | 11.1111 | |