PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54351-54400 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 92.3077 | 96.2264 | 88.6957 | 97.0805 | 102 | 4 | 102 | 13 | 2 | 15.3846 | |
| jlack-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 81.4286 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.7885 | 30 | 5 | 30 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 81.4286 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.2255 | 18 | 3 | 18 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 18 | 3 | 18 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.6316 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 92.3077 | 85.7143 | 100.0000 | 25.0000 | 42 | 7 | 42 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.7500 | 12 | 2 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4895 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7612 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 90.2552 | 42 | 7 | 42 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.3933 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.3702 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0588 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4138 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.6584 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 94.1964 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 94.4882 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.2703 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 95.3020 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.8000 | 30 | 5 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 94.7368 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.5556 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 87.8049 | 97.2973 | 93.3573 | 36 | 5 | 36 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.8904 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 93.5065 | 30 | 5 | 30 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.3111 | 6 | 1 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 92.3077 | 85.7143 | 100.0000 | 97.0732 | 6 | 1 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.5789 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9821 | 18 | 3 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3684 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.6562 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.6204 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.6449 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.3351 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.8037 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.8182 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1039 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.5517 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 95.6897 | 24 | 3 | 24 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.9245 | 30 | 5 | 30 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.2941 | 18 | 3 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9799 | 18 | 3 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.0833 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.2264 | 6 | 1 | 6 | 0 | 0 | ||