PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54251-54300 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.2579 | 87.4251 | 97.6562 | 63.9582 | 876 | 126 | 875 | 21 | 17 | 80.9524 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.2581 | 85.6287 | 100.0000 | 64.9635 | 143 | 24 | 144 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l100_m1_e0 | het | 92.2588 | 87.5769 | 97.4696 | 81.5171 | 39724 | 5635 | 39713 | 1031 | 76 | 7.3715 | |
| qzeng-custom | SNP | ti | map_siren | het | 92.2591 | 86.5538 | 98.7696 | 67.2335 | 53994 | 8388 | 53703 | 669 | 449 | 67.1151 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | het | 92.2591 | 91.5789 | 92.9495 | 86.7487 | 783 | 72 | 791 | 60 | 12 | 20.0000 | |
| gduggal-snapfb | INDEL | * | * | * | 92.2602 | 90.5733 | 94.0112 | 57.2799 | 312063 | 32479 | 322983 | 20575 | 9778 | 47.5237 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | * | 92.2615 | 90.9348 | 93.6275 | 94.8607 | 963 | 96 | 955 | 65 | 56 | 86.1538 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.2695 | 91.8075 | 92.7362 | 81.6429 | 17975 | 1604 | 17848 | 1398 | 224 | 16.0229 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.2695 | 91.8075 | 92.7362 | 81.6429 | 17975 | 1604 | 17848 | 1398 | 224 | 16.0229 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | het | 92.2712 | 93.4473 | 91.1244 | 67.5886 | 2952 | 207 | 3193 | 311 | 263 | 84.5659 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.2724 | 89.9329 | 94.7368 | 76.4706 | 134 | 15 | 144 | 8 | 4 | 50.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2739 | 87.8049 | 97.2222 | 88.5350 | 36 | 5 | 35 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.2750 | 85.9974 | 99.5413 | 87.6183 | 1302 | 212 | 1302 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.2757 | 91.7744 | 92.7824 | 61.6372 | 1774 | 159 | 1774 | 138 | 138 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.2767 | 87.0680 | 98.1481 | 43.3170 | 781 | 116 | 795 | 15 | 13 | 86.6667 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | * | 92.2805 | 91.6591 | 92.9104 | 95.4235 | 1011 | 92 | 996 | 76 | 57 | 75.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | het | 92.2826 | 87.7562 | 97.3014 | 82.8537 | 40718 | 5681 | 40707 | 1129 | 70 | 6.2002 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | * | 92.2852 | 87.0130 | 98.2375 | 52.4691 | 1139 | 170 | 1059 | 19 | 16 | 84.2105 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.2949 | 87.8641 | 97.1963 | 87.9301 | 181 | 25 | 208 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.2978 | 89.3146 | 95.4870 | 71.2322 | 5734 | 686 | 6813 | 322 | 214 | 66.4596 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.2978 | 89.3146 | 95.4870 | 71.2322 | 5734 | 686 | 6813 | 322 | 214 | 66.4596 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.3065 | 97.4471 | 87.6810 | 67.1193 | 3779 | 99 | 3694 | 519 | 13 | 2.5048 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 90.5660 | 6 | 1 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.2078 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.3177 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.3933 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.0887 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3913 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.6923 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 45.4545 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.9761 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.7198 | 12 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 61.2903 | 12 | 2 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.7745 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 96.0606 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.8723 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.2549 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.5610 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1538 | 6 | 1 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.6667 | 6 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.5889 | 18 | 3 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.9745 | 18 | 3 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.7742 | 18 | 3 | 19 | 0 | 0 | ||