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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1057 1058 1059 1060 1061 1062 1063 1064 1065 ... 1720 1721 » 53001-53050 / 86044 show all
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	90.9171	92.2101	89.6598	73.7675	28717	2426	29308	3380	1164	34.4379
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	90.9171	92.2101	89.6598	73.7675	28717	2426	29308	3380	1164	34.4379
gduggal-bwavard	SNP	ti	map_l250_m1_e0	*	90.9201	97.4012	85.2478	91.8224	4460	119	4438	768	26	3.3854
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	90.9225	84.6154	98.2456	43.0000	11	2	56	1	0	0.0000
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.9226	92.4365	89.4575	60.7169	1491	122	1451	171	123	71.9298
jli-custom	INDEL	D16_PLUS	map_l100_m2_e1	het	90.9254	90.1961	91.6667	94.4380	46	5	44	4	2	50.0000
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	90.9269	85.8170	96.6839	77.1395	1313	217	1312	45	41	91.1111
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	90.9269	85.8170	96.6839	77.1395	1313	217	1312	45	41	91.1111
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.9276	91.7603	90.1099	64.2202	245	22	246	27	5	18.5185
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.9278	97.6646	85.0604	50.5657	4642	111	4646	816	787	96.4461
ckim-isaac	INDEL	D6_15	HG002compoundhet	hetalt	90.9387	83.9774	99.1585	17.7185	6845	1306	7188	61	50	81.9672
asubramanian-gatk	INDEL	D16_PLUS	map_siren	het	90.9390	92.3077	89.6104	96.4236	72	6	69	8	1	12.5000
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	90.9395	84.4821	98.4657	87.4931	38610	7092	38635	602	167	27.7409
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	90.9395	84.4821	98.4657	87.4931	38610	7092	38635	602	167	27.7409
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.9430	86.9565	95.3125	86.7495	60	9	61	3	2	66.6667
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	90.9492	84.7458	98.1326	57.0052	2100	378	2102	40	4	10.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.9497	87.9032	94.2149	86.1556	109	15	114	7	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	90.9506	83.7500	99.5058	87.7720	603	117	604	3	1	33.3333
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	90.9511	85.8736	96.6667	77.4436	231	38	232	8	5	62.5000
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	90.9557	84.7716	98.1132	33.9074	1002	180	1092	21	18	85.7143
gduggal-snapvard	INDEL	D1_5	segdup	homalt	90.9566	86.6295	95.7386	91.9173	311	48	337	15	15	100.0000
jpowers-varprowl	SNP	ti	map_l250_m0_e0	het	90.9574	91.5418	90.3805	95.3348	855	79	855	91	17	18.6813
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.9582	83.4711	99.9208	44.6727	808	160	10092	8	8	100.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	90.9626	99.2511	83.9517	58.3543	2783	21	2783	532	532	100.0000
qzeng-custom	INDEL	*	map_siren	homalt	90.9652	86.4030	96.0361	77.3592	2294	361	2447	101	23	22.7723
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.9674	84.0188	99.1690	88.3848	715	136	716	6	1	16.6667
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9728	84.5626	98.4344	65.7965	493	90	503	8	8	100.0000
gduggal-bwavard	INDEL	*	map_siren	het	90.9729	98.0035	84.8835	87.6032	4418	90	4408	785	417	53.1210
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	90.9744	92.2581	89.7260	80.4813	143	12	131	15	3	20.0000
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	90.9774	95.2756	87.0504	53.0405	121	6	121	18	15	83.3333
gduggal-bwafb	INDEL	D6_15	*	hetalt	90.9853	84.6464	98.3504	52.1249	6919	1255	1252	21	21	100.0000
ltrigg-rtg1	INDEL	*	map_l100_m2_e1	hetalt	90.9869	84.0909	99.1150	91.3476	111	21	112	1	1	100.0000
ghariani-varprowl	INDEL	I1_5	map_l250_m2_e0	*	90.9871	93.8053	88.3333	97.2515	106	7	106	14	4	28.5714
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	90.9891	97.2501	85.4856	71.8215	34445	974	34119	5793	280	4.8334
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	90.9907	84.0382	99.1974	59.7025	616	117	618	5	2	40.0000
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	90.9909	83.7736	99.5690	47.3923	444	86	462	2	1	50.0000
gduggal-snapvard	SNP	ti	map_l125_m0_e0	*	90.9915	95.2045	87.1355	81.6073	12150	612	12043	1778	144	8.0990
ckim-vqsr	INDEL	*	map_l250_m2_e0	het	90.9931	93.8095	88.3408	97.8444	197	13	197	26	1	3.8462
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	90.9953	85.7143	96.9697	69.4444	30	5	32	1	1	100.0000
ciseli-custom	SNP	ti	map_l100_m1_e0	homalt	90.9965	90.6459	91.3498	59.1340	16280	1680	16242	1538	1227	79.7789
qzeng-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9981	84.0955	99.1351	58.5016	12965	2452	4585	40	31	77.5000
gduggal-bwafb	INDEL	I1_5	HG002compoundhet	hetalt	91.0057	84.5844	98.4821	73.0807	9454	1723	4282	66	66	100.0000
jlack-gatk	INDEL	*	HG002compoundhet	*	91.0082	90.7410	91.2769	62.3551	27186	2774	27070	2587	2465	95.2841
gduggal-bwavard	INDEL	D1_5	map_l125_m1_e0	het	91.0091	98.8981	84.2857	90.2155	718	8	708	132	17	12.8788
gduggal-snapplat	SNP	*	HG002complexvar	hetalt	91.0113	86.7742	95.6835	42.9158	269	41	266	12	12	100.0000
gduggal-snapplat	SNP	tv	HG002complexvar	hetalt	91.0113	86.7742	95.6835	42.9158	269	41	266	12	12	100.0000
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	91.0211	84.5394	98.5791	36.6641	8049	1472	8048	116	98	84.4828
jlack-gatk	INDEL	*	map_l150_m1_e0	het	91.0230	98.0117	84.9647	93.0437	838	17	842	149	6	4.0269
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	91.0253	90.5074	91.5493	68.7397	553	58	520	48	46	95.8333
gduggal-snapplat	SNP	*	tech_badpromoters	het	91.0256	92.2078	89.8734	77.4286	71	6	71	8	0	0.0000

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