PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52951-53000 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 96.4392 | 10 | 0 | 10 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 83.8710 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.5175 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.2830 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 95.4023 | 5 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 90.9091 | 86.2069 | 96.1538 | 77.1930 | 25 | 4 | 25 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 75.9036 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 80.0000 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 80.1980 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.0617 | 5 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.5175 | 25 | 5 | 25 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 99.1870 | 5 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.7444 | 5 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.7778 | 5 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.9091 | 93.7500 | 88.2353 | 76.0563 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9316 | 5 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.5124 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9757 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 98.0469 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.6667 | 5 | 1 | 5 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 77.2727 | 10 | 2 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 98.1685 | 5 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.2857 | 6 | 0 | 5 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 95.2778 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 74.0385 | 25 | 5 | 27 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 95.3168 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 93.8182 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 93.8628 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 86.8421 | 5 | 1 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 72.2222 | 10 | 2 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8042 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 96.4286 | 5 | 1 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 86.8421 | 5 | 1 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 94.1860 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9534 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 90.9106 | 86.5682 | 95.7115 | 51.1635 | 5981 | 928 | 4419 | 198 | 174 | 87.8788 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.9117 | 92.0249 | 89.8250 | 65.4470 | 5908 | 512 | 5853 | 663 | 643 | 96.9834 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.9117 | 92.0249 | 89.8250 | 65.4470 | 5908 | 512 | 5853 | 663 | 643 | 96.9834 | |