PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52901-52950 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.0874 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4359 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4359 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 35.2941 | 10 | 2 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.3077 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.3541 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | * | 90.9091 | 96.1538 | 86.2069 | 97.6404 | 75 | 3 | 75 | 12 | 2 | 16.6667 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 61.5385 | 10 | 2 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 97.7273 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 97.7679 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | * | 90.9091 | 88.2353 | 93.7500 | 52.9412 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 83.3333 | 100.0000 | 99.4632 | 10 | 2 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 99.4808 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.9091 | 83.3333 | 100.0000 | 99.1678 | 5 | 1 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.7917 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.9495 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | het | 90.9091 | 100.0000 | 83.3333 | 55.5556 | 10 | 0 | 10 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.1860 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.9091 | 100.0000 | 83.3333 | 97.8947 | 8 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | het | 90.9091 | 83.3333 | 100.0000 | 40.0000 | 20 | 4 | 21 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.1166 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.1795 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4253 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 93.3148 | 88.6243 | 46.6855 | 335 | 24 | 335 | 43 | 41 | 95.3488 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 77.6860 | 25 | 5 | 27 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 94.8571 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.2830 | 5 | 1 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | segdup | homalt | 90.9091 | 83.3333 | 100.0000 | 93.6306 | 10 | 2 | 10 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | hetalt | 90.9091 | 100.0000 | 83.3333 | 93.2584 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 93.2584 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.7715 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 40.0000 | 10 | 2 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 60.0000 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 66.6667 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 61.5385 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 90.9091 | 90.9091 | 90.9091 | 75.0000 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.6877 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | * | 90.9091 | 100.0000 | 83.3333 | 95.3125 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 95.4545 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 100.0000 | 83.3333 | 96.6667 | 3 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | * | 90.9091 | 100.0000 | 83.3333 | 53.8462 | 4 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | segdup | hetalt | 90.9091 | 83.3333 | 100.0000 | 95.9128 | 40 | 8 | 15 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |