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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1039 1040 1041 1042 1043 1044 1045 1046 1047 ... 1720 1721 » 52101-52150 / 86044 show all
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	90.0572	89.8904	90.2247	50.1569	38954	4381	59902	6490	4175	64.3297
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.0576	82.2478	99.5062	84.1820	3220	695	3224	16	14	87.5000
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	90.0602	82.8959	98.5801	34.3105	979	202	972	14	13	92.8571
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	90.0617	82.2222	99.5536	68.6275	222	48	223	1	1	100.0000
qzeng-custom	INDEL	*	HG002compoundhet	het	90.0667	93.8691	86.5604	55.7571	3843	251	30091	4672	2782	59.5462
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	90.0673	98.7902	82.7599	87.1462	2613	32	2285	476	24	5.0420
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	90.0691	91.5033	88.6792	75.9091	140	13	141	18	12	66.6667
qzeng-custom	INDEL	*	HG002complexvar	hetalt	90.0705	82.9143	98.5786	66.1860	3067	632	1179	17	13	76.4706
eyeh-varpipe	INDEL	C1_5	HG002complexvar	*	90.0749	85.7143	94.9030	78.7246	6	1	2495	134	108	80.5970
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	90.0772	83.7398	97.4522	74.9001	309	60	306	8	5	62.5000
ltrigg-rtg1	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0802	86.6397	93.8053	58.5321	214	33	212	14	14	100.0000
gduggal-snapvard	INDEL	I1_5	map_siren	*	90.0863	91.7138	88.5156	83.2677	2756	249	2898	376	184	48.9362
gduggal-snapvard	SNP	ti	map_l150_m2_e1	het	90.0889	96.5271	84.4559	85.0397	12563	452	12464	2294	173	7.5414
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.0901	81.9672	100.0000	54.1284	50	11	50	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.0901	81.9672	100.0000	54.1284	50	11	50	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.0901	81.9672	100.0000	54.1284	50	11	50	0	0
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	90.0901	89.2857	90.9091	84.7575	100	12	60	6	6	100.0000
gduggal-bwavard	INDEL	*	map_l100_m2_e0	het	90.0912	98.0928	83.2966	90.0573	2263	44	2269	455	186	40.8791
gduggal-bwaplat	SNP	*	map_siren	*	90.0933	82.3317	99.4705	71.0074	120392	25836	120427	641	167	26.0530
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	90.0979	90.1961	90.0000	90.0398	46	5	45	5	0	0.0000
gduggal-snapplat	SNP	ti	HG002complexvar	hetalt	90.1007	85.9903	94.6237	41.1392	178	29	176	10	10	100.0000
eyeh-varpipe	INDEL	C1_5	HG002compoundhet	*	90.1057	100.0000	81.9930	83.6384	1	0	469	103	87	84.4660
mlin-fermikit	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	90.1072	85.9151	94.7294	66.7970	13383	2194	13354	743	724	97.4428
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.1073	88.5417	91.7293	71.7322	255	33	244	22	12	54.5455
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	het	90.1080	83.9080	97.2973	99.8986	73	14	72	2	2	100.0000
jpowers-varprowl	INDEL	D1_5	map_l250_m0_e0	*	90.1099	89.1304	91.1111	97.6923	41	5	41	4	2	50.0000
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	90.1109	83.2972	98.1387	67.3931	1152	231	1160	22	6	27.2727
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	90.1124	96.0968	84.8297	79.1299	1748	71	1644	294	276	93.8776
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	90.1124	96.0968	84.8297	79.1299	1748	71	1644	294	276	93.8776
gduggal-snapplat	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1136	83.0190	98.5341	67.6995	16769	3430	16804	250	110	44.0000
ciseli-custom	SNP	tv	HG002compoundhet	hetalt	90.1141	82.4826	99.3017	17.9840	711	151	711	5	2	40.0000
ciseli-custom	SNP	*	HG002compoundhet	hetalt	90.1141	82.4826	99.3017	17.9840	711	151	711	5	2	40.0000
ltrigg-rtg1	INDEL	D16_PLUS	map_l125_m1_e0	*	90.1158	85.1852	95.6522	89.5928	23	4	22	1	0	0.0000
ltrigg-rtg1	INDEL	D16_PLUS	map_l125_m2_e0	*	90.1158	85.1852	95.6522	90.6504	23	4	22	1	0	0.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	90.1186	85.7143	95.0000	99.9602	18	3	19	1	1	100.0000
ckim-vqsr	INDEL	D1_5	map_l250_m2_e0	het	90.1186	94.2149	86.3636	97.4995	114	7	114	18	1	5.5556
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	90.1203	82.4985	99.2938	30.7241	1334	283	1406	10	10	100.0000
gduggal-snapfb	INDEL	*	map_l250_m2_e0	het	90.1205	89.0476	91.2195	94.6489	187	23	187	18	3	16.6667
qzeng-custom	INDEL	D1_5	map_l100_m2_e0	*	90.1218	83.8120	97.4590	87.8583	1605	310	1841	48	35	72.9167
dgrover-gatk	INDEL	*	map_l250_m0_e0	*	90.1235	93.5897	86.9048	97.9749	73	5	73	11	2	18.1818
egarrison-hhga	INDEL	D6_15	map_l100_m1_e0	*	90.1237	87.9845	92.3695	84.8816	227	31	230	19	11	57.8947
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	90.1286	83.9378	97.3054	91.0094	324	62	325	9	0	0.0000
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.1316	95.9720	84.9612	56.9426	548	23	548	97	95	97.9381
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1316	82.0359	100.0000	68.2540	137	30	140	0	0
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1316	82.0359	100.0000	64.7355	137	30	140	0	0
gduggal-snapplat	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	90.1322	86.5088	94.0725	74.1670	24187	3772	24250	1528	165	10.7984
raldana-dualsentieon	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	90.1333	91.3632	88.9362	70.2437	878	83	836	104	100	96.1538
ndellapenna-hhga	INDEL	D6_15	map_l100_m2_e1	*	90.1374	89.0909	91.2088	85.8549	245	30	249	24	12	50.0000
gduggal-bwavard	SNP	*	map_l250_m1_e0	*	90.1392	97.5353	83.7857	91.6472	7044	178	6976	1350	42	3.1111
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	het	90.1398	87.7647	92.6471	86.3079	746	104	693	55	49	89.0909

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