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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1033 1034 1035 1036 1037 1038 1039 1040 1041 ... 1720 1721 » 51801-51850 / 86044 show all
bgallagher-sentieon	INDEL	I6_15	map_l150_m1_e0	het	89.6552	86.6667	92.8571	95.2703	13	2	13	1	1	100.0000
bgallagher-sentieon	INDEL	I6_15	map_l150_m2_e0	het	89.6552	86.6667	92.8571	95.7187	13	2	13	1	1	100.0000
astatham-gatk	INDEL	I6_15	map_l150_m1_e0	het	89.6552	86.6667	92.8571	95.4248	13	2	13	1	1	100.0000
astatham-gatk	INDEL	I6_15	map_l150_m2_e0	het	89.6552	86.6667	92.8571	95.8333	13	2	13	1	1	100.0000
jpowers-varprowl	INDEL	D16_PLUS	map_l150_m1_e0	het	89.6552	92.8571	86.6667	98.0392	13	1	13	2	1	50.0000
ltrigg-rtg2	INDEL	I1_5	map_l250_m0_e0	het	89.6552	86.6667	92.8571	94.4444	13	2	13	1	0	0.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e0	hetalt	89.6552	81.2500	100.0000	93.6982	39	9	38	0	0
ltrigg-rtg1	INDEL	I1_5	map_l250_m0_e0	het	89.6552	86.6667	92.8571	93.5185	13	2	13	1	0	0.0000
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	89.6574	81.4353	99.7264	37.3608	522	119	729	2	2	100.0000
asubramanian-gatk	INDEL	*	map_l125_m0_e0	het	89.6574	87.7342	91.6667	93.1495	515	72	517	47	2	4.2553
asubramanian-gatk	INDEL	I1_5	map_l150_m2_e1	*	89.6631	83.2392	97.1616	92.9647	442	89	445	13	1	7.6923
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	89.6694	81.2734	100.0000	41.5512	217	50	211	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.6701	85.6906	94.0373	58.9423	2066	345	2066	131	124	94.6565
anovak-vg	SNP	tv	tech_badpromoters	*	89.6729	84.7222	95.2381	42.7273	61	11	60	3	3	100.0000
ndellapenna-hhga	INDEL	I16_PLUS	*	hetalt	89.6769	82.4118	98.3466	51.6538	1729	369	1725	29	24	82.7586
asubramanian-gatk	INDEL	I1_5	map_l150_m1_e0	*	89.6780	83.2016	97.2477	92.2073	421	85	424	12	1	8.3333
jlack-gatk	INDEL	D6_15	map_l100_m2_e0	het	89.6797	96.1832	84.0000	91.6574	126	5	126	24	3	12.5000
gduggal-snapvard	SNP	*	map_l150_m2_e1	het	89.6801	96.8079	83.5299	85.0251	19713	650	19475	3840	262	6.8229
gduggal-snapvard	INDEL	I1_5	map_l150_m1_e0	*	89.6858	94.8617	85.0455	90.4043	480	26	654	115	40	34.7826
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.6870	88.2788	91.1408	63.5606	5370	713	5257	511	485	94.9119
jlack-gatk	INDEL	I16_PLUS	HG002compoundhet	*	89.6882	87.2608	92.2546	52.5070	1870	273	1870	157	144	91.7197
astatham-gatk	SNP	*	map_siren	het	89.6918	81.4059	99.8557	63.3177	74072	16919	74058	107	41	38.3178
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	89.6918	90.6694	88.7352	58.9619	447	46	449	57	36	63.1579
qzeng-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	89.6938	81.4584	99.7817	61.4370	4837	1101	2742	6	5	83.3333
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.6962	98.4278	82.3875	81.4243	2379	38	2381	509	127	24.9509
qzeng-custom	INDEL	D1_5	map_l100_m1_e0	het	89.6970	83.6228	96.7227	89.7617	1011	198	1151	39	27	69.2308
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.6970	85.0575	94.8718	84.4000	74	13	74	4	2	50.0000
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	89.7025	92.8910	86.7257	67.8063	196	15	196	30	26	86.6667
gduggal-bwaplat	SNP	ti	HG002complexvar	hetalt	89.7041	82.1256	98.8235	43.1438	170	37	168	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l250_m2_e1	het	89.7059	100.0000	81.3333	97.2355	122	0	122	28	1	3.5714
jlack-gatk	INDEL	D6_15	map_l100_m1_e0	het	89.7059	96.8254	83.5616	91.2365	122	4	122	24	3	12.5000
jlack-gatk	INDEL	D6_15	map_l125_m1_e0	het	89.7059	95.3125	84.7222	93.7984	61	3	61	11	1	9.0909
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.7059	100.0000	81.3333	90.5779	61	0	61	14	13	92.8571
hfeng-pmm3	INDEL	D16_PLUS	map_l100_m2_e0	het	89.7079	93.7500	86.0000	94.7917	45	3	43	7	2	28.5714
anovak-vg	SNP	*	map_l125_m2_e1	homalt	89.7095	81.8047	99.3055	67.9368	14342	3190	14156	99	83	83.8384
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.7118	87.9829	91.5099	73.1427	5352	731	5303	492	469	95.3252
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	89.7127	90.8139	88.6378	45.2529	10064	1018	10984	1408	719	51.0653
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	89.7154	88.6381	90.8193	44.6755	5968	765	9932	1004	991	98.7052
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.7196	81.3559	100.0000	72.0430	48	11	52	0	0
gduggal-snapvard	INDEL	I1_5	map_l150_m2_e0	*	89.7214	94.9904	85.0062	90.8896	493	26	686	121	44	36.3636
gduggal-snapvard	SNP	ti	map_l150_m1_e0	het	89.7218	96.4268	83.8886	83.9806	11928	442	11835	2273	169	7.4351
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.7219	95.2762	84.7795	79.3418	1190	59	1192	214	189	88.3178
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.7219	95.2762	84.7795	79.3418	1190	59	1192	214	189	88.3178
jlack-gatk	INDEL	D1_5	map_l150_m0_e0	*	89.7284	97.9239	82.7988	93.2798	283	6	284	59	1	1.6949
ckim-isaac	INDEL	D6_15	segdup	het	89.7285	86.9565	92.6829	92.5319	80	12	76	6	6	100.0000
ckim-gatk	INDEL	D16_PLUS	map_l100_m2_e0	*	89.7297	92.2222	87.3684	95.8533	83	7	83	12	4	33.3333
hfeng-pmm1	INDEL	D16_PLUS	map_l100_m2_e0	*	89.7297	92.2222	87.3684	93.0250	83	7	83	12	2	16.6667
gduggal-snapvard	INDEL	I1_5	map_l150_m2_e1	*	89.7320	94.9153	85.0856	90.9633	504	27	696	122	45	36.8852
ciseli-custom	SNP	*	map_siren	*	89.7321	87.9989	91.5349	59.0239	128679	17549	128115	11848	2967	25.0422
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	89.7334	83.3333	97.1983	70.7071	455	91	451	13	8	61.5385

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