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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1026 1027 1028 1029 1030 1031 1032 1033 1034 ... 1720 1721 » 51451-51500 / 86044 show all
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	89.1342	81.8421	97.8528	62.7854	311	69	319	7	7	100.0000
anovak-vg	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	89.1362	91.0282	87.3213	73.7422	903	89	916	133	46	34.5865
gduggal-snapfb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	89.1402	99.2630	80.8911	72.6164	27474	204	27579	6515	214	3.2847
astatham-gatk	SNP	tv	map_l250_m2_e0	het	89.1403	81.2371	98.7469	92.0672	1576	364	1576	20	3	15.0000
ckim-gatk	SNP	ti	map_l125_m2_e1	het	89.1406	82.1659	97.4093	86.6958	15683	3404	15679	417	41	9.8321
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.1429	95.1220	83.8710	75.9067	78	4	78	15	15	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.1429	95.1220	83.8710	76.2755	78	4	78	15	15	100.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	89.1429	81.2500	98.7342	66.3830	156	36	156	2	2	100.0000
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	89.1434	91.8292	86.6102	71.1229	3248	289	20162	3117	3094	99.2621
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	89.1443	80.8806	99.2888	68.7833	698	165	698	5	4	80.0000
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	89.1445	83.7838	95.2381	81.2500	31	6	40	2	2	100.0000
jlack-gatk	SNP	*	map_l250_m0_e0	het	89.1456	97.3440	82.2210	96.2201	1466	40	1466	317	23	7.2555
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.1463	87.3563	91.0112	82.7519	76	11	81	8	7	87.5000
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	89.1469	90.2954	88.0272	87.4552	1284	138	1294	176	110	62.5000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.1470	91.9890	86.4754	82.1898	333	29	211	33	33	100.0000
ciseli-custom	INDEL	D1_5	*	homalt	89.1477	94.5898	84.2977	60.0900	46279	2647	46067	8581	7193	83.8247
gduggal-bwavard	INDEL	*	*	het	89.1538	98.0771	81.7188	63.1804	190400	3733	190127	42533	38764	91.1386
jlack-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.1544	80.6020	99.7372	41.6858	723	174	759	2	2	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.1553	96.5499	82.8127	57.5437	5485	196	5488	1139	1055	92.6251
gduggal-bwafb	INDEL	D6_15	map_l100_m2_e0	*	89.1561	82.1970	97.4026	85.7934	217	47	225	6	3	50.0000
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	89.1561	84.4122	94.4649	85.8278	1278	236	1280	75	7	9.3333
ckim-isaac	INDEL	I1_5	map_l100_m1_e0	het	89.1566	80.9524	99.2114	85.2042	629	148	629	5	1	20.0000
gduggal-bwafb	INDEL	D6_15	func_cds	*	89.1566	86.0465	92.5000	51.8072	37	6	37	3	3	100.0000
gduggal-bwaplat	INDEL	I6_15	segdup	hetalt	89.1566	82.2222	97.3684	92.6070	37	8	37	1	1	100.0000
gduggal-bwavard	INDEL	D6_15	func_cds	*	89.1566	86.0465	92.5000	58.7629	37	6	37	3	3	100.0000
jpowers-varprowl	INDEL	*	segdup	*	89.1593	88.3803	89.9522	94.2165	2259	297	2256	252	223	88.4921
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.1599	90.8840	87.5000	82.4945	329	33	210	30	30	100.0000
gduggal-bwavard	SNP	tv	map_l125_m0_e0	het	89.1615	98.1141	81.7062	85.2941	4318	83	4310	965	30	3.1088
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	89.1674	84.1986	94.7593	66.6240	2238	420	2224	123	104	84.5528
ciseli-custom	SNP	tv	map_l100_m2_e0	homalt	89.1677	87.8120	90.5658	64.9670	8091	1123	8083	842	633	75.1781
astatham-gatk	SNP	tv	map_l250_m2_e1	het	89.1681	81.2723	98.7631	92.1160	1597	368	1597	20	3	15.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	89.1696	81.5951	98.2942	69.4959	931	210	922	16	16	100.0000
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	89.1712	90.4306	87.9464	73.4911	189	20	197	27	10	37.0370
ciseli-custom	SNP	tv	map_l100_m2_e1	homalt	89.1763	87.8306	90.5639	64.9644	8170	1132	8158	850	639	75.1765
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.1786	80.8250	99.4580	43.1871	725	172	734	4	4	100.0000
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	89.1825	84.1463	94.8598	82.1963	207	39	203	11	9	81.8182
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	89.1830	82.6962	96.7742	67.5635	411	86	420	14	13	92.8571
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.1839	87.6797	90.7407	59.6010	427	60	441	45	26	57.7778
ckim-dragen	INDEL	D16_PLUS	map_siren	homalt	89.1892	97.0588	82.5000	94.7368	33	1	33	7	2	28.5714
gduggal-snapvard	SNP	ti	tech_badpromoters	homalt	89.1892	80.4878	100.0000	42.1053	33	8	33	0	0
jlack-gatk	SNP	tv	map_l250_m2_e0	het	89.1930	97.4227	82.2454	94.1018	1890	50	1890	408	18	4.4118
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	89.1967	80.5000	100.0000	50.1548	161	39	161	0	0
gduggal-bwavard	INDEL	*	map_l100_m0_e0	*	89.2130	93.9219	84.9537	89.1607	1468	95	1468	260	67	25.7692
gduggal-snapvard	INDEL	I1_5	*	het	89.2130	96.8839	82.6678	61.9450	76578	2463	82223	17239	13345	77.4117
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	89.2141	84.4066	94.6024	34.3983	5007	925	11480	655	637	97.2519
ndellapenna-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.2143	91.5033	87.0370	76.6234	140	13	141	21	16	76.1905
jmaeng-gatk	SNP	*	map_l100_m1_e0	*	89.2166	81.7563	98.1753	78.5878	59194	13209	59183	1100	78	7.0909
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	89.2190	94.9425	84.1463	67.3090	413	22	414	78	75	96.1538
ltrigg-rtg1	INDEL	I6_15	map_l125_m1_e0	het	89.2193	83.3333	96.0000	82.0144	25	5	24	1	0	0.0000
ltrigg-rtg1	INDEL	I6_15	map_l125_m2_e0	het	89.2193	83.3333	96.0000	84.4720	25	5	24	1	0	0.0000

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