PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51301-51350 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.9920 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m1_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.5207 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 87.5000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.8889 | 85.7143 | 92.3077 | 86.1702 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | decoy | homalt | 88.8889 | 100.0000 | 80.0000 | 99.7263 | 1 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 88.8889 | 100.0000 | 80.0000 | 95.3271 | 3 | 0 | 4 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9914 | 8 | 2 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.5841 | 32 | 8 | 29 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.5254 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 95.1482 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 95.1613 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 88.8889 | 88.8889 | 88.8889 | 96.0699 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 96.6543 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 96.6667 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.0210 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 88.8889 | 91.0891 | 86.7925 | 93.8746 | 184 | 18 | 184 | 28 | 1 | 3.5714 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.0149 | 4 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.9394 | 12 | 3 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.6667 | 12 | 3 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.8718 | 12 | 3 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 97.8417 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 88.8889 | 88.8889 | 88.8889 | 97.7099 | 24 | 3 | 24 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.8889 | 85.7143 | 92.3077 | 97.4855 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 28.5714 | 1 | 0 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.8889 | 85.7143 | 92.3077 | 87.9630 | 24 | 4 | 24 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.5040 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.3880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.3711 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3118 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 92.6554 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.5254 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m0_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.5899 | 12 | 3 | 12 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.8947 | 97.3720 | 81.7754 | 63.9228 | 54169 | 1462 | 54352 | 12113 | 797 | 6.5797 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 88.8955 | 90.5000 | 87.3469 | 59.7701 | 181 | 19 | 214 | 31 | 31 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9064 | 83.4507 | 95.1253 | 86.7650 | 711 | 141 | 683 | 35 | 18 | 51.4286 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.9077 | 80.6452 | 99.0566 | 99.9183 | 100 | 24 | 105 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 88.9148 | 94.6211 | 83.8576 | 74.5711 | 2023 | 115 | 2026 | 390 | 381 | 97.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | homalt | 88.9159 | 82.0205 | 97.0771 | 85.2746 | 958 | 210 | 1096 | 33 | 7 | 21.2121 | |