PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50951-51000 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 88.6086 | 87.8487 | 89.3817 | 86.9060 | 57410 | 7941 | 58141 | 6907 | 5920 | 85.7101 | |
| mlin-fermikit | INDEL | I6_15 | * | het | 88.6098 | 92.6243 | 84.9289 | 50.1273 | 9293 | 740 | 9315 | 1653 | 1640 | 99.2136 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 88.6104 | 85.6322 | 91.8033 | 92.7262 | 447 | 75 | 448 | 40 | 4 | 10.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | het | 88.6113 | 98.7654 | 80.3504 | 90.3081 | 480 | 6 | 642 | 157 | 63 | 40.1274 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.6118 | 96.7950 | 81.7043 | 50.5663 | 4953 | 164 | 4957 | 1110 | 1047 | 94.3243 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 88.6139 | 96.1944 | 82.1409 | 64.2130 | 5384 | 213 | 6062 | 1318 | 1266 | 96.0546 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.6180 | 82.8379 | 95.2651 | 48.0962 | 3205 | 664 | 2857 | 142 | 132 | 92.9577 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.6234 | 85.8268 | 91.6084 | 71.3427 | 109 | 18 | 131 | 12 | 5 | 41.6667 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | * | 88.6244 | 82.1745 | 96.1730 | 41.5559 | 1761 | 382 | 1734 | 69 | 67 | 97.1014 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | het | 88.6308 | 98.5965 | 80.4948 | 92.7959 | 843 | 12 | 846 | 205 | 44 | 21.4634 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | het | 88.6343 | 97.2835 | 81.3975 | 85.0700 | 7055 | 197 | 7036 | 1608 | 95 | 5.9080 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.6364 | 95.1220 | 82.9787 | 75.7106 | 78 | 4 | 78 | 16 | 16 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.6364 | 84.7826 | 92.8571 | 65.5738 | 39 | 7 | 39 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.6364 | 95.1220 | 82.9787 | 75.1323 | 78 | 4 | 78 | 16 | 16 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | hetalt | 88.6364 | 79.5918 | 100.0000 | 89.4472 | 39 | 10 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6364 | 89.6552 | 87.6404 | 92.1793 | 78 | 9 | 78 | 11 | 4 | 36.3636 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 88.6400 | 95.8478 | 82.4405 | 93.2094 | 277 | 12 | 277 | 59 | 6 | 10.1695 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | het | 88.6428 | 81.2273 | 97.5483 | 82.6203 | 12946 | 2992 | 12931 | 325 | 244 | 75.0769 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.6433 | 91.1458 | 86.2745 | 46.1741 | 175 | 17 | 176 | 28 | 19 | 67.8571 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 88.6513 | 85.7977 | 91.7012 | 92.6948 | 441 | 73 | 442 | 40 | 4 | 10.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.6525 | 79.8722 | 99.6016 | 46.2527 | 250 | 63 | 250 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.6540 | 89.8499 | 87.4895 | 45.7726 | 8498 | 960 | 9343 | 1336 | 702 | 52.5449 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 88.6545 | 85.9115 | 91.5784 | 51.4278 | 1805 | 296 | 1729 | 159 | 156 | 98.1132 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.6568 | 87.8116 | 89.5184 | 60.6466 | 317 | 44 | 316 | 37 | 30 | 81.0811 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 88.6605 | 87.9344 | 89.3987 | 86.9048 | 57466 | 7885 | 57984 | 6876 | 6009 | 87.3909 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 88.6605 | 87.9344 | 89.3987 | 86.9048 | 57466 | 7885 | 57984 | 6876 | 6009 | 87.3909 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.6622 | 97.0558 | 81.6049 | 51.6846 | 15296 | 464 | 15997 | 3606 | 3454 | 95.7848 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.6698 | 84.9899 | 92.6829 | 52.2246 | 419 | 74 | 418 | 33 | 30 | 90.9091 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 88.6737 | 96.3158 | 82.1551 | 76.7252 | 1281 | 49 | 1197 | 260 | 253 | 97.3077 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002compoundhet | het | 88.6756 | 89.3617 | 88.0000 | 93.8725 | 42 | 5 | 22 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 88.6792 | 79.6610 | 100.0000 | 71.7391 | 47 | 12 | 52 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_siren | hetalt | 88.6792 | 82.4561 | 95.9184 | 81.0078 | 47 | 10 | 47 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | homalt | 88.6840 | 79.6687 | 100.0000 | 81.7822 | 1058 | 270 | 1059 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.6883 | 83.8593 | 94.1074 | 46.2864 | 1621 | 312 | 1613 | 101 | 76 | 75.2475 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.6904 | 80.7888 | 98.3051 | 73.9357 | 635 | 151 | 638 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 88.6909 | 97.1990 | 81.5523 | 71.2536 | 17351 | 500 | 17263 | 3905 | 147 | 3.7644 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.6934 | 79.9189 | 99.6323 | 81.5479 | 4334 | 1089 | 4335 | 16 | 15 | 93.7500 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.6934 | 79.9189 | 99.6323 | 81.5479 | 4334 | 1089 | 4335 | 16 | 15 | 93.7500 | |
| ckim-gatk | SNP | * | map_l125_m2_e1 | het | 88.6934 | 81.7679 | 96.9006 | 87.2177 | 24236 | 5404 | 24230 | 775 | 56 | 7.2258 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | homalt | 88.6940 | 87.5770 | 89.8399 | 67.8832 | 9947 | 1411 | 9930 | 1123 | 909 | 80.9439 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.8268 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.7139 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | het | 88.7011 | 81.4464 | 97.3746 | 85.8996 | 14877 | 3389 | 14873 | 401 | 40 | 9.9751 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | * | 88.7012 | 84.9518 | 92.7969 | 32.0774 | 7672 | 1359 | 8799 | 683 | 663 | 97.0717 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7013 | 84.8315 | 92.9412 | 72.5806 | 151 | 27 | 158 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 94.6776 | 44 | 2 | 43 | 9 | 3 | 33.3333 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.1223 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.3989 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |