PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50251-50300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 94.7853 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 91.8919 | 7 | 2 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 95.7219 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 87.5000 | 87.5000 | 87.5000 | 96.8127 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 87.5000 | 87.5000 | 87.5000 | 96.9349 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.5000 | 77.7778 | 100.0000 | 96.2733 | 7 | 2 | 6 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.9474 | 14 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 86.2069 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 87.5000 | 79.0634 | 97.9522 | 47.2072 | 287 | 76 | 287 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 89.2308 | 7 | 2 | 7 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.5000 | 77.7778 | 100.0000 | 96.7890 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | het | 87.5000 | 87.5000 | 87.5000 | 33.3333 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 90.4306 | 35 | 10 | 20 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.5000 | 79.5455 | 97.2222 | 97.0322 | 35 | 9 | 35 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 87.5000 | 77.7778 | 100.0000 | 89.0625 | 7 | 2 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.7526 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.8367 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 97.0414 | 7 | 2 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | func_cds | het | 87.5000 | 77.7778 | 100.0000 | 46.1538 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.5000 | 77.7778 | 100.0000 | 95.7447 | 21 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.8905 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.4839 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.3784 | 14 | 4 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 85.1852 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.0684 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.1373 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 97.1138 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1818 | 7 | 2 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 96.7433 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 96.7495 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.4528 | 7 | 2 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 87.5000 | 79.2453 | 97.6744 | 93.5435 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 87.5000 | 79.2453 | 97.6744 | 94.2513 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 87.5000 | 79.2453 | 97.6744 | 94.4156 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 96.6862 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 96.6926 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 96.9799 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.0177 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.0233 | 7 | 2 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.1787 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.3265 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | het | 87.5000 | 100.0000 | 77.7778 | 96.5170 | 37 | 0 | 35 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1298 | 7 | 2 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 95.7219 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |