PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50201-50250 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | HG002compoundhet | * | 87.4314 | 80.5166 | 95.6453 | 38.0766 | 20791 | 5031 | 21327 | 971 | 803 | 82.6982 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.4317 | 91.9540 | 83.3333 | 94.2618 | 80 | 7 | 80 | 16 | 4 | 25.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4326 | 96.2516 | 80.0940 | 76.2162 | 3030 | 118 | 3066 | 762 | 11 | 1.4436 | |
| ckim-gatk | SNP | tv | map_l125_m1_e0 | het | 87.4351 | 80.3377 | 95.9080 | 87.2955 | 8135 | 1991 | 8133 | 347 | 14 | 4.0346 | |
| jmaeng-gatk | SNP | tv | map_l125_m1_e0 | het | 87.4372 | 80.5254 | 95.6471 | 87.5400 | 8154 | 1972 | 8152 | 371 | 12 | 3.2345 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.4375 | 78.5714 | 98.5591 | 89.4013 | 286 | 78 | 342 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | map_siren | homalt | 87.4388 | 77.6954 | 99.9762 | 56.7476 | 29459 | 8457 | 29428 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | * | 87.4390 | 93.0070 | 82.5000 | 95.1981 | 133 | 10 | 132 | 28 | 3 | 10.7143 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | het | 87.4417 | 97.6415 | 79.1712 | 92.9128 | 2898 | 70 | 2885 | 759 | 20 | 2.6351 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.4518 | 77.8195 | 99.8053 | 29.5610 | 1035 | 295 | 1025 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_siren | het | 87.4519 | 84.7172 | 90.3691 | 62.2108 | 77085 | 13906 | 76849 | 8190 | 211 | 2.5763 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 87.4562 | 79.3003 | 97.4820 | 62.2795 | 272 | 71 | 271 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 87.4660 | 79.0698 | 97.8571 | 75.1332 | 136 | 36 | 137 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.4670 | 80.5556 | 95.6757 | 56.8765 | 174 | 42 | 177 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e1 | het | 87.4676 | 98.7382 | 78.5064 | 92.5981 | 313 | 4 | 431 | 118 | 43 | 36.4407 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.4680 | 77.9553 | 99.6251 | 31.2943 | 976 | 276 | 1063 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.4697 | 78.9719 | 98.0167 | 90.7130 | 11507 | 3064 | 11515 | 233 | 49 | 21.0300 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.4697 | 78.9719 | 98.0167 | 90.7130 | 11507 | 3064 | 11515 | 233 | 49 | 21.0300 | |
| anovak-vg | INDEL | D1_5 | map_siren | * | 87.4723 | 88.4103 | 86.5539 | 80.0641 | 3120 | 409 | 3122 | 485 | 188 | 38.7629 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.4735 | 79.3814 | 97.4026 | 83.5118 | 77 | 20 | 75 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 87.4751 | 80.0000 | 96.4912 | 84.4687 | 28 | 7 | 55 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.4763 | 84.1506 | 91.0757 | 53.9857 | 5320 | 1002 | 9889 | 969 | 796 | 82.1465 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.4763 | 84.1506 | 91.0757 | 53.9857 | 5320 | 1002 | 9889 | 969 | 796 | 82.1465 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.4768 | 80.1802 | 96.2343 | 47.0067 | 178 | 44 | 230 | 9 | 9 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | * | 87.4786 | 100.0000 | 77.7439 | 86.1311 | 4 | 0 | 255 | 73 | 32 | 43.8356 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | het | 87.4792 | 79.8611 | 96.7041 | 73.8541 | 1380 | 348 | 1379 | 47 | 44 | 93.6170 | |
| gduggal-snapvard | SNP | * | map_l125_m0_e0 | het | 87.4804 | 96.0281 | 80.3301 | 84.3236 | 12161 | 503 | 12023 | 2944 | 184 | 6.2500 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4816 | 88.0131 | 86.9565 | 72.4315 | 536 | 73 | 560 | 84 | 71 | 84.5238 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | homalt | 87.4842 | 78.2705 | 99.1566 | 59.7237 | 7078 | 1965 | 7054 | 60 | 60 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 87.4852 | 80.3681 | 95.9854 | 91.2376 | 262 | 64 | 263 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 87.4862 | 79.2271 | 97.6676 | 67.3333 | 328 | 86 | 335 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | het | 87.4904 | 81.0811 | 95.0000 | 89.3899 | 30 | 7 | 38 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | het | 87.4983 | 97.7667 | 79.1818 | 87.0966 | 1182 | 27 | 1529 | 402 | 157 | 39.0547 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m0_e0 | homalt | 87.5000 | 77.7778 | 100.0000 | 95.1157 | 7 | 2 | 19 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | * | 87.5000 | 82.3529 | 93.3333 | 55.8824 | 14 | 3 | 14 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 75.0000 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2381 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 93.4307 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.9429 | 14 | 0 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 87.5000 | 87.5000 | 87.5000 | 99.5368 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 96.1538 | 7 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.5000 | 87.5000 | 87.5000 | 42.8571 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.9914 | 7 | 2 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.2748 | 7 | 2 | 15 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 87.5000 | 77.7778 | 100.0000 | 92.1348 | 7 | 2 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.5000 | 87.5000 | 87.5000 | 50.0000 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | hetalt | 87.5000 | 77.7778 | 100.0000 | 84.0000 | 56 | 16 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 94.7977 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 92.6829 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |