PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
351-400 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.2963 | 100.0000 | 92.8571 | 97.1074 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.8000 | 99.5968 | 98.0159 | 88.3710 | 247 | 1 | 247 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9733 | 99.5868 | 98.3673 | 88.4051 | 241 | 1 | 241 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9107 | 99.5614 | 98.2684 | 87.7971 | 227 | 1 | 227 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.7427 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0629 | 99.4624 | 98.6667 | 86.1470 | 370 | 2 | 370 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0424 | 99.4505 | 98.6376 | 86.1143 | 362 | 2 | 362 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.0014 | 99.4269 | 98.5795 | 85.3088 | 347 | 2 | 347 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6577 | 99.3243 | 98.0000 | 87.4896 | 147 | 1 | 147 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3569 | 99.6774 | 99.0385 | 83.3511 | 618 | 2 | 618 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3266 | 99.6622 | 98.9933 | 82.4396 | 590 | 2 | 590 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0366 | 99.6124 | 98.4674 | 83.9975 | 257 | 1 | 257 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9248 | 99.8496 | 100.0000 | 40.4484 | 1328 | 2 | 1328 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.9798 | 98.4772 | 97.4874 | 60.2000 | 194 | 3 | 194 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5630 | 99.4272 | 99.6991 | 49.6904 | 3645 | 21 | 3645 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9214 | 99.9214 | 99.9214 | 54.3038 | 10170 | 8 | 10169 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2500 | 73.2394 | 91.2281 | 63.4615 | 52 | 19 | 52 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2372 | 98.7305 | 99.7490 | 37.0877 | 7155 | 92 | 7154 | 18 | 18 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8033 | 98.0989 | 99.5179 | 50.4556 | 5573 | 108 | 5573 | 27 | 24 | 88.8889 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0051 | 98.4010 | 99.6166 | 36.8952 | 4677 | 76 | 4677 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7294 | 97.9480 | 99.5234 | 39.3399 | 5012 | 105 | 5012 | 24 | 23 | 95.8333 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1087 | 92.3483 | 98.0392 | 62.9283 | 350 | 29 | 350 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4565 | 99.1870 | 99.7275 | 80.7349 | 366 | 3 | 366 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4485 | 99.0842 | 99.8155 | 76.9264 | 541 | 5 | 541 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5781 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4175 | 99.2248 | 99.6109 | 65.3171 | 256 | 2 | 256 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6271 | 99.4292 | 99.8258 | 72.6049 | 21774 | 125 | 21771 | 38 | 37 | 97.3684 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5893 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6171 | 94.9468 | 98.3471 | 64.1481 | 714 | 38 | 714 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.4815 | 74 | 0 | 74 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9450 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | HG002compoundhet | homalt | 93.1153 | 98.9691 | 87.9154 | 78.3801 | 288 | 3 | 291 | 40 | 38 | 95.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002complexvar | homalt | 99.7026 | 99.6414 | 99.7639 | 58.4249 | 10560 | 38 | 10565 | 25 | 23 | 92.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | * | homalt | 99.7606 | 99.6505 | 99.8710 | 59.0122 | 48755 | 171 | 48760 | 63 | 56 | 88.8889 | |
| rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | homalt | 93.9394 | 91.1765 | 96.8750 | 88.8889 | 31 | 3 | 31 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||