PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
151-200 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I6_15 | map_siren | homalt | 97.1429 | 94.4444 | 100.0000 | 81.5618 | 85 | 5 | 85 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.7179 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.6486 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 6 | 2 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 83.3333 | 71.4286 | 100.0000 | 96.1832 | 5 | 2 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 83.3333 | 71.4286 | 100.0000 | 95.6140 | 5 | 2 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.8254 | 2 | 2 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 92.8571 | 86.6667 | 100.0000 | 92.3977 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 92.8571 | 86.6667 | 100.0000 | 92.0732 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 92.8571 | 86.6667 | 100.0000 | 91.0959 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 4 | 2 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.5484 | 87.8788 | 100.0000 | 88.0658 | 29 | 4 | 29 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.5484 | 87.8788 | 100.0000 | 87.7637 | 29 | 4 | 29 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.5484 | 87.8788 | 100.0000 | 86.3850 | 29 | 4 | 29 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 9 | 3 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 57.2464 | 59 | 0 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.6415 | 95.8333 | 99.5192 | 63.1206 | 207 | 9 | 207 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.1024 | 48 | 1 | 48 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.0495 | 94.1176 | 96.0000 | 76.9231 | 144 | 9 | 144 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.3110 | 89.7106 | 97.2125 | 69.4681 | 279 | 32 | 279 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0748 | 89.3617 | 97.1098 | 66.2109 | 168 | 20 | 168 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.0792 | 88.1517 | 96.3731 | 68.2566 | 186 | 25 | 186 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.4444 | 79.1667 | 90.4762 | 80.0000 | 19 | 5 | 19 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5075 | 97.0588 | 100.0000 | 69.7248 | 66 | 2 | 66 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.5056 | 92.3913 | 98.8372 | 69.0647 | 85 | 7 | 85 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.1765 | 86.1111 | 96.8750 | 70.9091 | 31 | 5 | 31 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.7187 | 94.7933 | 98.7241 | 70.9453 | 619 | 34 | 619 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.2883 | 83.0508 | 94.2308 | 77.3913 | 49 | 10 | 49 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 36.0000 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | homalt | 48.8189 | 100.0000 | 32.2917 | 75.1295 | 31 | 0 | 31 | 65 | 65 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | homalt | 98.6717 | 97.8583 | 99.4987 | 53.9792 | 1188 | 26 | 1191 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | * | homalt | 97.7056 | 96.5700 | 98.8683 | 48.6914 | 6025 | 214 | 6028 | 69 | 68 | 98.5507 | |
| rpoplin-dv42 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.6061 | 13 | 0 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | segdup | homalt | 99.1543 | 99.1543 | 99.1543 | 92.6746 | 469 | 4 | 469 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | homalt | 99.5047 | 99.4224 | 99.5871 | 77.9738 | 1205 | 7 | 1206 | 5 | 3 | 60.0000 | |