PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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1351-1400 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8278 | 98.3293 | 99.3313 | 69.2512 | 11359 | 193 | 11290 | 76 | 45 | 59.2105 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2759 | 99.4208 | 99.1315 | 77.0261 | 2403 | 14 | 2397 | 21 | 12 | 57.1429 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.6873 | 98.6945 | 96.7005 | 84.8345 | 378 | 5 | 381 | 13 | 9 | 69.2308 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7758 | 98.4234 | 97.1366 | 86.2132 | 437 | 7 | 441 | 13 | 9 | 69.2308 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.5294 | 97.1014 | 100.0000 | 91.7160 | 67 | 2 | 70 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7078 | 100.0000 | 99.4172 | 52.2803 | 858 | 0 | 853 | 5 | 2 | 40.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7261 | 99.8636 | 99.5890 | 49.1643 | 1464 | 2 | 1454 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5105 | 99.3794 | 99.6419 | 52.1832 | 1121 | 7 | 1113 | 4 | 2 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8278 | 98.3293 | 99.3313 | 69.2512 | 11359 | 193 | 11290 | 76 | 45 | 59.2105 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5290 | 99.4853 | 99.5728 | 52.8503 | 10050 | 52 | 10023 | 43 | 23 | 53.4884 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | func_cds | homalt | 99.8860 | 99.8673 | 99.9047 | 18.9998 | 5268 | 7 | 5243 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9922 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | HG002compoundhet | homalt | 98.8966 | 98.7963 | 98.9971 | 38.0829 | 7305 | 89 | 5429 | 55 | 41 | 74.5455 | |
| qzeng-custom | SNP | ti | HG002complexvar | homalt | 99.2303 | 98.6432 | 99.8245 | 18.6252 | 190839 | 2625 | 186005 | 327 | 247 | 75.5352 | |
| qzeng-custom | SNP | ti | * | homalt | 99.6207 | 99.3383 | 99.9047 | 15.9860 | 797725 | 5314 | 792891 | 756 | 473 | 62.5661 | |
| qzeng-custom | SNP | * | tech_badpromoters | homalt | 98.0970 | 97.5000 | 98.7013 | 46.1538 | 78 | 2 | 76 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | segdup | homalt | 99.2653 | 99.1250 | 99.4061 | 87.8458 | 10649 | 94 | 10544 | 63 | 57 | 90.4762 | |
| qzeng-custom | SNP | * | map_siren | homalt | 92.7642 | 86.8464 | 99.5474 | 49.2732 | 47901 | 7255 | 47073 | 214 | 193 | 90.1869 | |
| qzeng-custom | SNP | * | map_l250_m2_e1 | homalt | 74.8704 | 60.3017 | 98.7211 | 89.3099 | 1639 | 1079 | 1621 | 21 | 20 | 95.2381 | |
| qzeng-custom | SNP | * | map_l250_m2_e0 | homalt | 74.7183 | 60.0894 | 98.7624 | 89.3086 | 1614 | 1072 | 1596 | 20 | 19 | 95.0000 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | homalt | 73.6061 | 58.5465 | 99.0960 | 88.7560 | 1442 | 1021 | 1425 | 13 | 13 | 100.0000 | |
| qzeng-custom | SNP | * | map_l250_m0_e0 | homalt | 69.0753 | 53.1002 | 98.7988 | 95.2759 | 334 | 295 | 329 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m2_e1 | homalt | 80.8266 | 68.2422 | 99.1019 | 73.2731 | 8071 | 3756 | 7945 | 72 | 72 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m2_e0 | homalt | 80.6830 | 68.0315 | 99.1149 | 73.2795 | 7959 | 3740 | 7839 | 70 | 70 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m1_e0 | homalt | 80.0720 | 67.1516 | 99.1488 | 70.4941 | 7570 | 3703 | 7455 | 64 | 64 | 100.0000 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | homalt | 74.2731 | 59.5011 | 98.8021 | 79.7981 | 2433 | 1656 | 2392 | 29 | 29 | 100.0000 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | homalt | 83.7240 | 72.4219 | 99.2062 | 67.7495 | 12697 | 4835 | 12498 | 100 | 99 | 99.0000 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | homalt | 83.6128 | 72.2475 | 99.2214 | 67.7362 | 12553 | 4822 | 12362 | 97 | 96 | 98.9691 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | homalt | 83.2331 | 71.6711 | 99.2430 | 64.3421 | 12116 | 4789 | 11930 | 91 | 90 | 98.9011 | |
| qzeng-custom | SNP | * | map_l125_m0_e0 | homalt | 77.7882 | 64.0644 | 98.9949 | 72.2676 | 4300 | 2412 | 4235 | 43 | 42 | 97.6744 | |
| qzeng-custom | SNP | * | map_l100_m2_e1 | homalt | 87.9899 | 78.9574 | 99.3560 | 60.6459 | 21947 | 5849 | 21600 | 140 | 134 | 95.7143 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | homalt | 87.8998 | 78.8141 | 99.3533 | 60.6693 | 21692 | 5831 | 21356 | 139 | 133 | 95.6835 | |
| qzeng-custom | SNP | * | map_l100_m1_e0 | homalt | 87.6866 | 78.4579 | 99.3758 | 57.2534 | 21186 | 5817 | 20855 | 131 | 129 | 98.4733 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | homalt | 82.4060 | 70.4991 | 99.1522 | 62.7863 | 8192 | 3428 | 8070 | 69 | 68 | 98.5507 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 96.9697 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6334 | 99.4522 | 99.8153 | 34.5977 | 2723 | 15 | 2702 | 5 | 4 | 80.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5900 | 97.5610 | 97.6190 | 93.3754 | 40 | 1 | 41 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6500 | 99.6294 | 99.6706 | 40.2309 | 6720 | 25 | 6656 | 22 | 11 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7774 | 99.7208 | 99.8342 | 53.5684 | 6071 | 17 | 6021 | 10 | 8 | 80.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 95.5836 | 14 | 1 | 14 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3772 | 99.5369 | 99.2181 | 66.4594 | 3439 | 16 | 3426 | 27 | 14 | 51.8519 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9649 | 98.5390 | 99.3944 | 72.2038 | 16727 | 248 | 16577 | 101 | 58 | 57.4257 | |