PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
51-100 / 86044 show all
rpoplin-dv42SNPtisegdupwithalthomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtisegduphomalt
99.8469
99.9067
99.7871
88.5156
7498774981616
100.0000
rpoplin-dv42SNPtimap_sirenhomalt
99.8060
99.7283
99.8838
52.4445
37813103378144442
95.4545
rpoplin-dv42SNPtimap_l250_m2_e1homalt
98.9217
98.3634
99.4863
87.6793
174329174399
100.0000
rpoplin-dv42SNPtimap_l250_m2_e0homalt
98.9359
98.3419
99.5370
87.6280
172029172088
100.0000
rpoplin-dv42SNPtimap_l250_m1_e0homalt
98.8722
98.1954
99.5584
86.5187
157829157877
100.0000
rpoplin-dv42SNPtimap_l250_m0_e0homalt
98.4936
97.4771
99.5316
91.1005
4251142522
100.0000
rpoplin-dv42SNPtimap_l150_m2_e1homalt
99.3872
99.0901
99.6862
73.4415
76237076232423
95.8333
rpoplin-dv42SNPtimap_l150_m2_e0homalt
99.3810
99.0809
99.6830
73.3835
75467075462423
95.8333
rpoplin-dv42SNPtimap_l150_m1_e0homalt
99.3702
99.0583
99.6841
71.0853
72586972582322
95.6522
rpoplin-dv42SNPtimap_l150_m0_e0homalt
98.9435
98.3702
99.5236
74.2304
27164527161312
92.3077
rpoplin-dv42SNPtimap_l125_m2_e1homalt
99.5496
99.3367
99.7633
68.9111
1138276113822726
96.2963
rpoplin-dv42SNPtimap_l125_m2_e0homalt
99.5456
99.3309
99.7613
68.8663
1128276112822726
96.2963
rpoplin-dv42SNPtimap_l125_m1_e0homalt
99.5372
99.3119
99.7635
66.3061
1096976109692625
96.1538
rpoplin-dv42SNPtimap_l125_m0_e0homalt
99.2059
98.7531
99.6629
68.6730
44355644351514
93.3333
rpoplin-dv42SNPtimap_l100_m2_e1homalt
99.6670
99.5404
99.7940
62.9692
1840985184103836
94.7368
rpoplin-dv42SNPtimap_l100_m2_e0homalt
99.6664
99.5412
99.7919
62.9736
1822584182263836
94.7368
rpoplin-dv42SNPtimap_l100_m1_e0homalt
99.6655
99.5323
99.7990
60.4404
1787684178773634
94.4444
rpoplin-dv42SNPtimap_l100_m0_e0homalt
99.4451
99.1253
99.7670
62.0330
77066877061817
94.4444
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
95.5556
20200
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9299
99.9299
99.9299
28.6857
14261142611
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
92.5156
3503600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.8637
100.0000
42.6858
21983219800
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7213
60600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7923
99.6445
99.9406
65.1625
16826168211
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6890
99.4621
99.9169
79.7698
240413240621
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0826
98.6945
99.4737
82.8674
378537821
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2090
98.8739
99.5465
84.4225
439543921
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
90.5333
6907100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7078
99.4172
100.0000
48.8609
853585300
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7607
99.5225
100.0000
46.7518
14597145900
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
52.3709
11253112500
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8762
99.8119
99.9405
50.3909
10083191008365
83.3333
rpoplin-dv42SNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.8773
99.7549
100.0000
64.8765
12213122300
rpoplin-dv42SNPtifunc_cdshomalt
99.9716
99.9431
100.0000
21.4775
52723527200
rpoplin-dv42SNPtidecoyhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtiHG002compoundhethomalt
99.7770
99.8377
99.7163
30.8389
73821273822120
95.2381
rpoplin-dv42SNPtiHG002complexvarhomalt
99.9574
99.9530
99.9617
18.4113
193372911933677472
97.2973
rpoplin-dv42SNPti*homalt
99.9800
99.9747
99.9853
16.8487
802835203802832118106
89.8305
rpoplin-dv42SNP*tech_badpromotershomalt
98.7500
98.7500
98.7500
50.9202
7917911
100.0000
rpoplin-dv42SNP*segdupwithalthomalt
0.0000
100.0000
00000