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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85901-85950 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | func_cds | * | 99.5441 | 99.8512 | 99.2389 | 30.8362 | 18123 | 27 | 18123 | 139 | 14 | 10.0719 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7513 | 98.3837 | 85.9566 | 77.5029 | 4687 | 77 | 4713 | 770 | 56 | 7.2727 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.4136 | 99.0024 | 92.0759 | 67.6063 | 55076 | 555 | 55287 | 4758 | 565 | 11.8747 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.5713 | 98.5668 | 83.7756 | 81.6259 | 45047 | 655 | 45212 | 8756 | 515 | 5.8817 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7848 | 99.4179 | 94.2876 | 66.3675 | 4270 | 25 | 4275 | 259 | 18 | 6.9498 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.1761 | 99.4340 | 93.1248 | 68.3364 | 6149 | 35 | 6163 | 455 | 33 | 7.2528 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.0858 | 99.4585 | 92.9344 | 71.8889 | 3857 | 21 | 3867 | 294 | 19 | 6.4626 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 58.3357 | 89.3782 | 43.2977 | 89.0534 | 345 | 41 | 365 | 478 | 34 | 7.1130 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 68.4840 | 92.9334 | 54.2196 | 86.0939 | 2525 | 192 | 2602 | 2197 | 203 | 9.2399 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 70.4099 | 93.3699 | 56.5131 | 85.6582 | 2211 | 157 | 2269 | 1746 | 174 | 9.9656 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.7327 | 97.7687 | 79.5653 | 85.1430 | 10560 | 241 | 10653 | 2736 | 243 | 8.8816 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.5713 | 98.5668 | 83.7756 | 81.6259 | 45047 | 655 | 45212 | 8756 | 515 | 5.8817 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.8942 | 97.5031 | 85.1244 | 74.2945 | 9450 | 242 | 9545 | 1668 | 246 | 14.7482 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.1609 | 80.9524 | 75.5556 | 97.2477 | 34 | 8 | 34 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4684 | 99.6391 | 97.3249 | 58.7610 | 17115 | 62 | 17136 | 471 | 62 | 13.1635 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5798 | 99.2191 | 94.0773 | 54.5022 | 18041 | 142 | 18092 | 1139 | 144 | 12.6427 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.2728 | 88.8112 | 66.8367 | 94.9485 | 127 | 16 | 131 | 65 | 9 | 13.8462 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.9537 | 99.3610 | 96.5858 | 46.1375 | 7308 | 47 | 7327 | 259 | 42 | 16.2162 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 100.0000 | 75.0000 | 97.3684 | 9 | 0 | 9 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | * | 97.6658 | 98.4806 | 96.8644 | 74.2691 | 32342 | 499 | 32344 | 1047 | 227 | 21.6810 | |
| ghariani-varprowl | SNP | * | map_l100_m1_e0 | * | 98.3728 | 99.0277 | 97.7266 | 70.1377 | 71699 | 704 | 71702 | 1668 | 318 | 19.0647 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | * | 98.3520 | 99.0401 | 97.6734 | 71.9819 | 73254 | 710 | 73257 | 1745 | 322 | 18.4527 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | * | 98.3564 | 99.0460 | 97.6764 | 72.0101 | 74024 | 713 | 74027 | 1761 | 324 | 18.3986 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | * | 97.0458 | 98.1171 | 95.9976 | 79.8507 | 19020 | 365 | 19020 | 793 | 172 | 21.6898 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | * | 97.9382 | 98.7204 | 97.1684 | 75.3206 | 44747 | 580 | 44747 | 1304 | 273 | 20.9356 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | * | 97.9545 | 98.7522 | 97.1696 | 76.9826 | 46140 | 583 | 46140 | 1344 | 275 | 20.4613 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | * | 97.9668 | 98.7606 | 97.1856 | 77.0392 | 46617 | 585 | 46617 | 1350 | 276 | 20.4444 | |
| ghariani-varprowl | SNP | * | map_l150_m0_e0 | * | 96.3674 | 97.6729 | 95.0963 | 84.3053 | 11752 | 280 | 11752 | 606 | 137 | 22.6073 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 97.7612 | 0 | 26 | 0 | 3 | 3 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.5000 | 54.0541 | 74.0741 | 77.3109 | 20 | 17 | 20 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 72.7273 | 72.7273 | 72.7273 | 82.8125 | 8 | 3 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 66.6667 | 61.5385 | 72.7273 | 84.7222 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 66.6667 | 61.5385 | 72.7273 | 86.8263 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 66.6667 | 61.5385 | 72.7273 | 86.9048 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 59.2593 | 53.3333 | 66.6667 | 87.5000 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 59.2593 | 53.3333 | 66.6667 | 88.9908 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 59.2593 | 53.3333 | 66.6667 | 89.0909 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 44.4444 | 50.0000 | 40.0000 | 86.4865 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | * | 50.0000 | 45.4545 | 55.5556 | 88.7500 | 5 | 6 | 5 | 4 | 3 | 75.0000 | |