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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85801-85850 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 98.6686 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 86.4865 | 94.1176 | 80.0000 | 98.5653 | 16 | 1 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 98.5735 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.7392 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 99.5155 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 99.4356 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | * | 72.7273 | 80.0000 | 66.6667 | 99.4398 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | * | 63.0655 | 62.9371 | 63.1944 | 94.7137 | 90 | 53 | 91 | 53 | 38 | 71.6981 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdup | * | 80.9978 | 79.3103 | 82.7586 | 95.3226 | 46 | 12 | 48 | 10 | 8 | 80.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | * | * | 89.8931 | 89.1478 | 90.6510 | 61.1738 | 130819 | 15925 | 130678 | 13477 | 11237 | 83.3791 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | * | 93.6809 | 93.5932 | 93.7688 | 56.5500 | 30619 | 2096 | 30473 | 2025 | 1375 | 67.9012 | |
| ghariani-varprowl | INDEL | D1_5 | HG002compoundhet | * | 18.5546 | 15.5456 | 23.0082 | 71.0145 | 1902 | 10333 | 1880 | 6291 | 6060 | 96.3281 | |
| ghariani-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9798 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | func_cds | * | 91.6923 | 93.7107 | 89.7590 | 41.3428 | 149 | 10 | 149 | 17 | 10 | 58.8235 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 44.2793 | 38.8052 | 51.5516 | 63.0411 | 1546 | 2438 | 1545 | 1452 | 1385 | 95.3857 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 72.7273 | 88.8889 | 99.5759 | 8 | 3 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 79.5775 | 77.4363 | 81.8404 | 75.0483 | 49893 | 14538 | 49840 | 11059 | 10522 | 95.1442 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.1643 | 84.6457 | 87.7384 | 69.2630 | 645 | 117 | 644 | 90 | 80 | 88.8889 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 77.7778 | 70.0000 | 87.5000 | 99.6063 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.3062 | 89.0402 | 89.5738 | 76.8026 | 1373 | 169 | 1366 | 159 | 137 | 86.1635 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.4890 | 90.6867 | 90.2922 | 79.9205 | 964 | 99 | 958 | 103 | 83 | 80.5825 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7984 | 28.7018 | 41.0959 | 58.9386 | 692 | 1719 | 690 | 989 | 957 | 96.7644 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9130 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.8395 | 42.0033 | 50.4468 | 47.0151 | 8651 | 11945 | 8637 | 8484 | 8329 | 98.1730 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | * | 97.5510 | 98.4482 | 96.6701 | 79.2964 | 30134 | 475 | 30134 | 1038 | 222 | 21.3873 | |
| ghariani-varprowl | SNP | * | map_l150_m2_e0 | * | 97.6045 | 98.4962 | 96.7287 | 80.6842 | 31373 | 479 | 31373 | 1061 | 223 | 21.0179 | |
| ghariani-varprowl | SNP | * | map_l150_m2_e1 | * | 97.6142 | 98.5067 | 96.7377 | 80.7467 | 31729 | 481 | 31729 | 1070 | 224 | 20.9346 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | * | 92.9666 | 96.5808 | 89.6132 | 94.6918 | 2062 | 73 | 2062 | 239 | 29 | 12.1339 | |
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | * | 95.4295 | 97.2861 | 93.6425 | 90.9971 | 7026 | 196 | 7026 | 477 | 84 | 17.6101 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | * | 95.6186 | 97.4255 | 93.8776 | 91.4090 | 7682 | 203 | 7682 | 501 | 87 | 17.3653 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | * | 95.6014 | 97.4208 | 93.8488 | 91.4722 | 7781 | 206 | 7781 | 510 | 89 | 17.4510 | |
| ghariani-varprowl | SNP | * | map_siren | * | 98.7774 | 99.3373 | 98.2237 | 61.6367 | 145259 | 969 | 145263 | 2627 | 430 | 16.3685 | |
| ghariani-varprowl | SNP | * | segdup | * | 97.8779 | 99.6437 | 96.1737 | 92.2561 | 27967 | 100 | 27975 | 1113 | 70 | 6.2893 | |
| ghariani-varprowl | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | tech_badpromoters | * | 96.5732 | 98.7261 | 94.5122 | 54.3175 | 155 | 2 | 155 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | SNP | ti | * | * | 99.5372 | 99.8784 | 99.1982 | 22.5770 | 2082957 | 2536 | 2083186 | 16837 | 1291 | 7.6676 | |
| ghariani-varprowl | SNP | ti | HG002complexvar | * | 99.5322 | 99.7412 | 99.3241 | 19.7678 | 507113 | 1316 | 507283 | 3452 | 789 | 22.8563 | |
| ghariani-varprowl | SNP | ti | HG002compoundhet | * | 88.8369 | 93.7235 | 84.4347 | 48.3203 | 16381 | 1097 | 16496 | 3041 | 899 | 29.5626 | |
| ghariani-varprowl | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | func_cds | * | 99.6201 | 99.8549 | 99.3864 | 28.0976 | 13767 | 20 | 13767 | 85 | 9 | 10.5882 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0759 | 98.6453 | 88.1018 | 77.5526 | 3204 | 44 | 3221 | 435 | 34 | 7.8161 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1859 | 99.0236 | 91.6345 | 64.6332 | 27686 | 273 | 27790 | 2537 | 281 | 11.0761 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.5410 | 98.7028 | 87.1034 | 79.6250 | 30739 | 404 | 30832 | 4565 | 319 | 6.9880 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2784 | 99.5607 | 95.0984 | 65.7462 | 2946 | 13 | 2949 | 152 | 10 | 6.5790 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4739 | 99.4515 | 93.6694 | 63.2423 | 3989 | 22 | 3995 | 270 | 19 | 7.0370 | |