PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85651-85700 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | segdupwithalt | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.3208 | 43.7811 | 51.4831 | 46.1266 | 7994 | 10265 | 7984 | 7524 | 7396 | 98.2988 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 49.3962 | 45.5461 | 53.9573 | 55.1768 | 10134 | 12116 | 10117 | 8633 | 8451 | 97.8918 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 62.9779 | 59.7881 | 66.5273 | 42.2033 | 14672 | 9868 | 14642 | 7367 | 7111 | 96.5250 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 15.8746 | 12.3386 | 22.2513 | 50.7732 | 86 | 611 | 85 | 297 | 292 | 98.3165 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.1108 | 97.1608 | 97.0609 | 55.5769 | 24639 | 720 | 24636 | 746 | 544 | 72.9223 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 76.4899 | 74.2821 | 78.8329 | 50.1539 | 8821 | 3054 | 8808 | 2365 | 2266 | 95.8140 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 33.0811 | 28.3279 | 39.7508 | 61.8410 | 349 | 883 | 351 | 532 | 502 | 94.3609 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 79.6213 | 77.5816 | 81.7711 | 43.7436 | 3163 | 914 | 3158 | 704 | 666 | 94.6023 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 18.8065 | 16.0000 | 22.8070 | 67.0520 | 12 | 63 | 13 | 44 | 41 | 93.1818 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | * | 90.5391 | 95.3650 | 86.1780 | 88.0700 | 823 | 40 | 823 | 132 | 24 | 18.1818 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m1_e0 | * | 91.4375 | 94.4805 | 88.5845 | 86.5571 | 1746 | 102 | 1746 | 225 | 65 | 28.8889 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | * | 91.5803 | 94.5692 | 88.7745 | 87.1803 | 1811 | 104 | 1811 | 229 | 65 | 28.3843 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | * | 91.5085 | 94.4817 | 88.7167 | 87.2602 | 1832 | 107 | 1832 | 233 | 66 | 28.3262 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | * | 90.8918 | 96.5726 | 85.8423 | 90.8419 | 479 | 17 | 479 | 79 | 10 | 12.6582 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7326 | 95.8640 | 87.9427 | 88.9869 | 1043 | 45 | 1043 | 143 | 27 | 18.8811 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | * | 91.9463 | 95.8880 | 88.3159 | 89.5819 | 1096 | 47 | 1096 | 145 | 27 | 18.6207 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | * | 91.8807 | 95.8513 | 88.2259 | 89.6373 | 1109 | 48 | 1109 | 148 | 28 | 18.9189 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 88.6400 | 95.8478 | 82.4405 | 93.2094 | 277 | 12 | 277 | 59 | 6 | 10.1695 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | * | 90.5611 | 95.6764 | 85.9649 | 90.8486 | 686 | 31 | 686 | 112 | 20 | 17.8571 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | * | 90.8639 | 95.8060 | 86.4066 | 91.3346 | 731 | 32 | 731 | 115 | 21 | 18.2609 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5545 | 95.5013 | 86.0950 | 91.3170 | 743 | 35 | 743 | 120 | 22 | 18.3333 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 75.6757 | 91.3043 | 64.6154 | 97.7586 | 42 | 4 | 42 | 23 | 2 | 8.6957 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 86.3271 | 94.1520 | 79.7030 | 96.1626 | 161 | 10 | 161 | 41 | 4 | 9.7561 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 87.0000 | 94.5652 | 80.5556 | 96.3624 | 174 | 10 | 174 | 42 | 4 | 9.5238 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 87.0647 | 94.5946 | 80.6452 | 96.4327 | 175 | 10 | 175 | 42 | 4 | 9.5238 | |
| ghariani-varprowl | INDEL | D1_5 | map_siren | * | 93.0194 | 95.1544 | 90.9781 | 84.3263 | 3358 | 171 | 3358 | 333 | 117 | 35.1351 | |
| ghariani-varprowl | INDEL | D1_5 | segdup | * | 91.2316 | 92.0218 | 90.4550 | 95.5776 | 1015 | 88 | 1014 | 107 | 65 | 60.7477 | |
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9952 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | * | 73.6842 | 73.6842 | 73.6842 | 48.6486 | 14 | 5 | 14 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | * | * | 61.5999 | 58.5275 | 65.0128 | 56.9372 | 15271 | 10821 | 15265 | 8215 | 8072 | 98.2593 | |
| ghariani-varprowl | INDEL | D6_15 | HG002complexvar | * | 76.3894 | 73.9155 | 79.0345 | 58.8274 | 3919 | 1383 | 3913 | 1038 | 969 | 93.3526 | |