PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85551-85600 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C6_15 | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | * | 78.0985 | 94.5098 | 66.5434 | 94.1611 | 723 | 42 | 720 | 362 | 4 | 1.1050 | |
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | * | 84.2656 | 95.6932 | 75.2762 | 90.8080 | 2533 | 114 | 2521 | 828 | 30 | 3.6232 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | * | 84.9127 | 95.5933 | 76.3788 | 91.3348 | 2755 | 127 | 2742 | 848 | 31 | 3.6557 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e1 | * | 84.9786 | 95.5761 | 76.4966 | 91.4134 | 2787 | 129 | 2773 | 852 | 31 | 3.6385 | |
| gduggal-snapvard | SNP | tv | map_siren | * | 95.8840 | 96.8735 | 94.9146 | 68.0322 | 44494 | 1436 | 44271 | 2372 | 211 | 8.8955 | |
| gduggal-snapvard | SNP | tv | segdup | * | 97.9096 | 97.0933 | 98.7396 | 94.2289 | 8284 | 248 | 8226 | 105 | 33 | 31.4286 | |
| gduggal-snapvard | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | tv | tech_badpromoters | * | 85.8248 | 84.7222 | 86.9565 | 55.7692 | 61 | 11 | 60 | 9 | 1 | 11.1111 | |
| ghariani-varprowl | INDEL | * | * | * | 87.2025 | 87.3272 | 87.0781 | 72.0067 | 300877 | 43663 | 300632 | 44612 | 40345 | 90.4353 | |
| ghariani-varprowl | INDEL | * | HG002complexvar | * | 91.5434 | 91.6620 | 91.4251 | 69.4318 | 70522 | 6415 | 70273 | 6591 | 5330 | 80.8679 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | * | 14.6445 | 14.5761 | 14.7135 | 73.0382 | 4367 | 25593 | 4334 | 25122 | 24561 | 97.7669 | |
| ghariani-varprowl | INDEL | * | decoy | * | 90.0000 | 90.0000 | 90.0000 | 99.9820 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | func_cds | * | 91.6388 | 92.3596 | 90.9292 | 61.0680 | 411 | 34 | 411 | 41 | 30 | 73.1707 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 43.5285 | 42.1324 | 45.0202 | 75.7921 | 4244 | 5829 | 4231 | 5167 | 5021 | 97.1744 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.7768 | 12 | 8 | 12 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.4538 | 73.6260 | 75.3005 | 77.0932 | 69539 | 24910 | 69470 | 22787 | 21717 | 95.3043 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.6441 | 58.6663 | 60.6552 | 76.8269 | 38339 | 27012 | 38291 | 24838 | 23765 | 95.6800 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 78.6349 | 78.0148 | 79.2648 | 83.6794 | 1682 | 474 | 1682 | 440 | 405 | 92.0455 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.5000 | 58.8235 | 66.6667 | 99.8072 | 10 | 7 | 10 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 84.9840 | 84.8017 | 85.1670 | 81.2419 | 4341 | 778 | 4335 | 755 | 704 | 93.2450 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 87.7018 | 87.7726 | 87.6311 | 81.7733 | 3180 | 443 | 3174 | 448 | 412 | 91.9643 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 34.5163 | 33.2073 | 35.9327 | 70.3914 | 2020 | 4063 | 2009 | 3582 | 3513 | 98.0737 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 98.9865 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.3446 | 44.0478 | 46.7201 | 60.8982 | 16695 | 21207 | 16673 | 19014 | 18688 | 98.2855 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.3491 | 46.0834 | 48.6863 | 59.5527 | 14743 | 17249 | 14732 | 15527 | 15257 | 98.2611 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 50.3682 | 49.0920 | 51.7125 | 68.7841 | 21274 | 22061 | 21244 | 19837 | 19439 | 97.9936 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 59.6441 | 58.6663 | 60.6552 | 76.8269 | 38339 | 27012 | 38291 | 24838 | 23765 | 95.6800 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 59.5761 | 58.3242 | 60.8829 | 60.3781 | 21342 | 15250 | 21309 | 13691 | 13201 | 96.4210 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.2653 | 18.2294 | 20.4260 | 59.9344 | 383 | 1718 | 374 | 1457 | 1446 | 99.2450 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3238 | 96.5464 | 96.1023 | 63.4311 | 27284 | 976 | 27270 | 1106 | 763 | 68.9873 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.4170 | 67.7419 | 69.1057 | 99.9232 | 84 | 40 | 85 | 38 | 22 | 57.8947 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.9195 | 72.9786 | 74.8850 | 67.4004 | 14495 | 5367 | 14485 | 4858 | 4633 | 95.3685 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 33.8478 | 32.4294 | 35.3960 | 74.1660 | 861 | 1794 | 858 | 1566 | 1515 | 96.7433 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 74.6805 | 73.6967 | 75.6909 | 58.8837 | 4962 | 1771 | 4957 | 1592 | 1522 | 95.6030 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.6875 | 19.8198 | 21.6346 | 68.9552 | 44 | 178 | 45 | 163 | 158 | 96.9325 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | * | 90.4000 | 93.9859 | 87.0777 | 93.2660 | 1469 | 94 | 1469 | 218 | 66 | 30.2752 | |
| ghariani-varprowl | INDEL | * | map_l100_m1_e0 | * | 90.4036 | 92.6380 | 88.2744 | 91.8947 | 3322 | 264 | 3320 | 441 | 203 | 46.0317 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | * | 90.4686 | 92.6889 | 88.3523 | 92.4226 | 3423 | 270 | 3421 | 451 | 206 | 45.6763 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | * | 90.3178 | 92.5453 | 88.1950 | 92.4782 | 3476 | 280 | 3474 | 465 | 216 | 46.4516 | |
| ghariani-varprowl | INDEL | * | map_l125_m0_e0 | * | 91.1268 | 94.8980 | 87.6440 | 95.1166 | 837 | 45 | 837 | 118 | 30 | 25.4237 | |
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | * | 91.7859 | 94.3996 | 89.3130 | 93.6193 | 1989 | 118 | 1989 | 238 | 77 | 32.3529 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e0 | * | 91.8919 | 94.4444 | 89.4737 | 94.0645 | 2074 | 122 | 2074 | 244 | 79 | 32.3770 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | * | 91.8033 | 94.3820 | 89.3617 | 94.1271 | 2100 | 125 | 2100 | 250 | 82 | 32.8000 | |