PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84251-84300 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2467 | 99.6334 | 98.8630 | 62.3274 | 10871 | 40 | 10869 | 125 | 24 | 19.2000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.9883 | 99.2888 | 85.6879 | 49.6867 | 7399 | 53 | 7430 | 1241 | 43 | 3.4650 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.4525 | 83.3333 | 8.5158 | 71.3389 | 35 | 7 | 35 | 376 | 1 | 0.2660 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.3491 | 99.6812 | 89.5584 | 44.0081 | 3439 | 11 | 3448 | 402 | 4 | 0.9950 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 2.5000 | 100.0000 | 1.2658 | 65.6522 | 1 | 0 | 1 | 78 | 1 | 1.2821 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | * | 96.3071 | 96.6979 | 95.9195 | 73.9602 | 10718 | 366 | 10719 | 456 | 169 | 37.0614 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | * | 97.5300 | 97.9838 | 97.0805 | 69.8683 | 24007 | 494 | 24008 | 722 | 232 | 32.1330 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | * | 97.5647 | 98.0226 | 97.1111 | 71.6649 | 24538 | 495 | 24539 | 730 | 232 | 31.7808 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | * | 97.5848 | 98.0422 | 97.1318 | 71.7053 | 24788 | 495 | 24789 | 732 | 232 | 31.6940 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | * | 95.3719 | 95.7171 | 95.0292 | 79.3444 | 6347 | 284 | 6347 | 332 | 129 | 38.8554 | |
| gduggal-snapfb | SNP | tv | map_l125_m1_e0 | * | 96.8139 | 97.2340 | 96.3974 | 74.1586 | 15573 | 443 | 15573 | 582 | 212 | 36.4261 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | * | 96.8780 | 97.2952 | 96.4644 | 75.8291 | 16043 | 446 | 16043 | 588 | 214 | 36.3946 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | * | 96.8978 | 97.3224 | 96.4768 | 75.8806 | 16211 | 446 | 16211 | 592 | 214 | 36.1486 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | * | 94.8348 | 95.2324 | 94.4405 | 83.5277 | 3975 | 199 | 3975 | 234 | 89 | 38.0342 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | * | 96.2193 | 96.5634 | 95.8777 | 77.9802 | 10537 | 375 | 10536 | 453 | 179 | 39.5143 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | * | 96.3189 | 96.6711 | 95.9692 | 79.3481 | 10977 | 378 | 10976 | 461 | 180 | 39.0456 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | * | 96.3446 | 96.7049 | 95.9869 | 79.3609 | 11123 | 379 | 11122 | 465 | 180 | 38.7097 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | * | 93.9650 | 94.6405 | 93.2990 | 94.3329 | 724 | 41 | 724 | 52 | 12 | 23.0769 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | * | 94.8003 | 95.0510 | 94.5509 | 89.8505 | 2516 | 131 | 2516 | 145 | 53 | 36.5517 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | * | 94.8696 | 95.2811 | 94.4616 | 90.2325 | 2746 | 136 | 2746 | 161 | 55 | 34.1615 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | * | 94.8302 | 95.3018 | 94.3633 | 90.2818 | 2779 | 137 | 2779 | 166 | 55 | 33.1325 | |
| gduggal-snapfb | SNP | tv | map_siren | * | 98.2058 | 98.6697 | 97.7461 | 64.5313 | 45319 | 611 | 45320 | 1045 | 278 | 26.6029 | |
| gduggal-snapfb | SNP | tv | segdup | * | 98.5144 | 99.4491 | 97.5971 | 92.7173 | 8485 | 47 | 8489 | 209 | 12 | 5.7416 | |
| gduggal-snapfb | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | tech_badpromoters | * | 90.4459 | 98.6111 | 83.5294 | 68.8645 | 71 | 1 | 71 | 14 | 1 | 7.1429 | |
| gduggal-snapplat | INDEL | * | * | * | 76.4210 | 69.0418 | 85.5664 | 67.7420 | 237878 | 106664 | 258555 | 43614 | 6600 | 15.1328 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | * | 75.2674 | 67.2243 | 85.4968 | 64.1998 | 51721 | 25217 | 55926 | 9487 | 1463 | 15.4211 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | * | 42.2745 | 36.5854 | 50.0587 | 72.5688 | 10961 | 18999 | 11522 | 11495 | 5404 | 47.0117 | |
| gduggal-snapplat | INDEL | * | decoy | * | 46.1538 | 30.0000 | 100.0000 | 99.9940 | 3 | 7 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | func_cds | * | 70.8193 | 61.5730 | 83.3333 | 53.5627 | 274 | 171 | 315 | 63 | 1 | 1.5873 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.4305 | 22.6149 | 42.1263 | 81.2487 | 2278 | 7795 | 2734 | 3756 | 1082 | 28.8072 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 44.1176 | 30.0000 | 83.3333 | 99.9060 | 6 | 14 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 67.1528 | 57.9879 | 79.7584 | 80.2389 | 54769 | 39680 | 61674 | 15652 | 4576 | 29.2359 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 48.6764 | 39.2603 | 64.0343 | 80.0683 | 25657 | 39694 | 30253 | 16992 | 4936 | 29.0490 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 47.8156 | 40.9091 | 57.5278 | 84.8321 | 882 | 1274 | 982 | 725 | 38 | 5.2414 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 49.5868 | 35.2941 | 83.3333 | 99.9019 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 42.2807 | 34.7724 | 53.9244 | 82.6368 | 1780 | 3339 | 2068 | 1767 | 59 | 3.3390 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 41.5098 | 33.5081 | 54.5317 | 83.3700 | 1214 | 2409 | 1444 | 1204 | 29 | 2.4086 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.1770 | 18.1983 | 36.0063 | 77.7972 | 1107 | 4976 | 1374 | 2442 | 776 | 31.7772 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 51.2406 | 42.6785 | 64.1003 | 68.1692 | 16176 | 21726 | 19332 | 10827 | 4241 | 39.1706 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.6919 | 47.1555 | 68.0020 | 66.7689 | 15086 | 16906 | 17977 | 8459 | 3479 | 41.1278 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 50.2628 | 41.8345 | 62.9440 | 73.1508 | 18129 | 25206 | 21603 | 12718 | 4309 | 33.8811 | |
| gduggal-snapplat | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9965 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | * | 60.1093 | 57.8947 | 62.5000 | 76.8116 | 11 | 8 | 10 | 6 | 1 | 16.6667 | |
| gduggal-snapplat | INDEL | D6_15 | * | * | 49.9163 | 35.9727 | 81.5114 | 64.7243 | 9386 | 16706 | 8068 | 1830 | 539 | 29.4536 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | * | 44.3210 | 31.1015 | 77.0858 | 66.5750 | 1649 | 3653 | 1312 | 390 | 129 | 33.0769 | |