PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83901-83950 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 48.7654 | 95.6463 | 0 | 0 | 79 | 83 | 9 | 10.8434 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 48.1928 | 95.6316 | 0 | 0 | 80 | 86 | 9 | 10.4651 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 28.5714 | 96.1406 | 0 | 0 | 16 | 40 | 3 | 7.5000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 43.8095 | 95.8167 | 0 | 0 | 46 | 59 | 5 | 8.4746 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 44.5455 | 96.0686 | 0 | 0 | 49 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 44.5455 | 96.1417 | 0 | 0 | 49 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 25.0000 | 96.2425 | 0 | 0 | 11 | 33 | 3 | 9.0909 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 36.5854 | 95.8959 | 0 | 0 | 30 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 37.3494 | 96.2730 | 0 | 0 | 31 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 37.3494 | 96.3339 | 0 | 0 | 31 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 20.0000 | 98.5229 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.5753 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.8097 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.9151 | 90.2558 | 95.7358 | 51.6673 | 2399 | 259 | 29209 | 1301 | 1194 | 91.7756 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.0000 | 100.0000 | 60.0000 | 99.9892 | 1 | 0 | 6 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 69.6175 | 73.0888 | 66.4609 | 58.6501 | 2849 | 1049 | 4092 | 2065 | 1377 | 66.6828 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7668 | 34.5725 | 31.1404 | 85.7143 | 93 | 176 | 71 | 157 | 40 | 25.4777 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 78.1683 | 81.1429 | 75.4042 | 51.8889 | 852 | 198 | 1306 | 426 | 326 | 76.5258 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | * | 90.6741 | 94.8435 | 86.8559 | 87.7132 | 515 | 28 | 826 | 125 | 46 | 36.8000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | * | 90.7660 | 93.5026 | 88.1850 | 85.4828 | 1252 | 87 | 1754 | 235 | 108 | 45.9574 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | * | 90.7740 | 93.4211 | 88.2728 | 86.1304 | 1278 | 90 | 1799 | 239 | 111 | 46.4435 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | * | 90.6674 | 93.3333 | 88.1496 | 86.2733 | 1302 | 93 | 1815 | 244 | 114 | 46.7213 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | * | 89.9579 | 95.1613 | 85.2941 | 90.0943 | 295 | 15 | 493 | 85 | 27 | 31.7647 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | * | 90.5689 | 94.8193 | 86.6832 | 88.0250 | 787 | 43 | 1048 | 161 | 65 | 40.3727 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | * | 90.3981 | 94.5158 | 86.6242 | 88.6067 | 810 | 47 | 1088 | 168 | 70 | 41.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | * | 90.4900 | 94.5977 | 86.7243 | 88.6844 | 823 | 47 | 1104 | 169 | 71 | 42.0118 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | * | 87.1622 | 93.1818 | 81.8731 | 92.8122 | 164 | 12 | 271 | 60 | 15 | 25.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | * | 89.6858 | 94.8617 | 85.0455 | 90.4043 | 480 | 26 | 654 | 115 | 40 | 34.7826 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7214 | 94.9904 | 85.0062 | 90.8896 | 493 | 26 | 686 | 121 | 44 | 36.3636 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e1 | * | 89.7320 | 94.9153 | 85.0856 | 90.9633 | 504 | 27 | 696 | 122 | 45 | 36.8852 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m0_e0 | * | 77.9468 | 83.3333 | 73.2143 | 97.7734 | 20 | 4 | 41 | 15 | 3 | 20.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | * | 83.3611 | 92.4528 | 75.8974 | 95.7498 | 98 | 8 | 148 | 47 | 13 | 27.6596 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | * | 84.1683 | 92.9204 | 76.9231 | 95.9931 | 105 | 8 | 160 | 48 | 13 | 27.0833 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | * | 84.2599 | 92.9825 | 77.0335 | 96.0759 | 106 | 8 | 161 | 48 | 13 | 27.0833 | |
| gduggal-snapvard | INDEL | I1_5 | map_siren | * | 90.0863 | 91.7138 | 88.5156 | 83.2677 | 2756 | 249 | 2898 | 376 | 184 | 48.9362 | |
| gduggal-snapvard | INDEL | I1_5 | segdup | * | 91.3324 | 90.4627 | 92.2190 | 95.0889 | 958 | 101 | 960 | 81 | 68 | 83.9506 | |
| gduggal-snapvard | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | * | * | 50.7754 | 45.6827 | 57.1459 | 41.2412 | 11338 | 13481 | 13483 | 10111 | 8109 | 80.1998 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | * | 55.8350 | 49.5825 | 63.8921 | 47.3893 | 2375 | 2415 | 2794 | 1579 | 1240 | 78.5307 | |
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | * | 20.6071 | 16.5147 | 27.3957 | 31.7261 | 1449 | 7325 | 1478 | 3917 | 3324 | 84.8609 | |
| gduggal-snapvard | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | func_cds | * | 62.1299 | 60.4651 | 63.8889 | 40.0000 | 26 | 17 | 23 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.7429 | 20.8134 | 37.3970 | 59.0695 | 174 | 662 | 227 | 380 | 217 | 57.1053 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 44.1015 | 42.1796 | 46.2069 | 48.7496 | 2241 | 3072 | 3551 | 4134 | 3627 | 87.7358 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1509 | 37.5633 | 45.4962 | 49.7904 | 2374 | 3946 | 3379 | 4048 | 3339 | 82.4852 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.9926 | 38.2022 | 51.8519 | 68.8462 | 68 | 110 | 84 | 78 | 56 | 71.7949 | |