PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83851-83900 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | tech_badpromoters | * | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | * | * | 87.8248 | 91.1601 | 84.7249 | 55.7284 | 133771 | 12972 | 160064 | 28858 | 22853 | 79.1912 | |
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | * | 89.5567 | 91.9115 | 87.3195 | 53.8184 | 30067 | 2646 | 34830 | 5058 | 3634 | 71.8466 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | * | 63.8171 | 65.9528 | 61.8155 | 58.2289 | 8068 | 4165 | 12360 | 7635 | 5847 | 76.5815 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9600 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | func_cds | * | 87.5742 | 91.8239 | 83.7004 | 42.8212 | 146 | 13 | 190 | 37 | 33 | 89.1892 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 45.6100 | 45.3313 | 45.8922 | 57.7778 | 1806 | 2178 | 2860 | 3372 | 2355 | 69.8399 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 50.0000 | 93.7500 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | * | * | 59.8991 | 90.0000 | 44.8865 | 88.9071 | 9 | 1 | 3125 | 3837 | 400 | 10.4248 | |
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | * | 81.4638 | 100.0000 | 68.7248 | 77.2577 | 7 | 0 | 3072 | 1398 | 373 | 26.6810 | |
| gduggal-snapvard | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 30.1095 | 80.7008 | 0 | 1 | 330 | 766 | 111 | 14.4909 | |
| gduggal-snapvard | INDEL | C1_5 | decoy | * | 0.0000 | 0.0000 | 99.9756 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 33.3333 | 85.7143 | 0 | 0 | 3 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 10.5727 | 87.5855 | 0 | 0 | 48 | 406 | 22 | 5.4187 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 54.3265 | 100.0000 | 37.2933 | 91.2179 | 3 | 0 | 857 | 1441 | 188 | 13.0465 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 38.3328 | 100.0000 | 23.7109 | 89.9572 | 1 | 0 | 584 | 1879 | 136 | 7.2379 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.4737 | 90.2062 | 0 | 0 | 22 | 130 | 4 | 3.0769 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 21.0702 | 87.1009 | 0 | 0 | 63 | 236 | 11 | 4.6610 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 24.8705 | 87.2439 | 0 | 0 | 48 | 145 | 9 | 6.2069 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.4017 | 83.5211 | 0 | 0 | 22 | 212 | 16 | 7.5472 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 30.2294 | 87.6521 | 0 | 0 | 224 | 517 | 58 | 11.2186 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 38.4615 | 88.9511 | 0 | 0 | 205 | 328 | 43 | 13.1098 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 26.8946 | 89.0519 | 0 | 0 | 291 | 791 | 71 | 8.9760 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 38.3328 | 100.0000 | 23.7109 | 89.9572 | 1 | 0 | 584 | 1879 | 136 | 7.2379 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 41.7303 | 90.1219 | 0 | 0 | 328 | 458 | 93 | 20.3057 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 2.9412 | 89.6657 | 0 | 0 | 1 | 33 | 2 | 6.0606 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4688 | 100.0000 | 67.3203 | 93.0926 | 1 | 0 | 206 | 100 | 19 | 19.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 27.2727 | 99.8437 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 38.6341 | 100.0000 | 23.9420 | 83.0324 | 1 | 0 | 198 | 629 | 44 | 6.9952 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 7.3529 | 85.3132 | 0 | 0 | 10 | 126 | 4 | 3.1746 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.2239 | 100.0000 | 38.1443 | 82.3636 | 1 | 0 | 74 | 120 | 20 | 16.6667 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 9.0909 | 81.6667 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 37.0370 | 95.7547 | 0 | 0 | 30 | 51 | 4 | 7.8431 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 49.0566 | 95.2861 | 0 | 0 | 78 | 81 | 9 | 11.1111 | |