PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83601-83650 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | map_l250_m0_e0 | * | 81.2227 | 72.9412 | 91.6256 | 96.8509 | 558 | 207 | 558 | 51 | 14 | 27.4510 | |
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | * | 85.6503 | 79.4862 | 92.8508 | 94.0020 | 2104 | 543 | 2104 | 162 | 67 | 41.3580 | |
| gduggal-snapplat | SNP | tv | map_l250_m2_e0 | * | 86.3687 | 80.4650 | 93.2074 | 94.2777 | 2319 | 563 | 2319 | 169 | 71 | 42.0118 | |
| gduggal-snapplat | SNP | tv | map_l250_m2_e1 | * | 86.4238 | 80.5556 | 93.2143 | 94.3146 | 2349 | 567 | 2349 | 171 | 71 | 41.5205 | |
| gduggal-snapplat | SNP | tv | map_siren | * | 96.3584 | 95.1687 | 97.5782 | 71.5667 | 43711 | 2219 | 43717 | 1085 | 492 | 45.3456 | |
| gduggal-snapplat | SNP | tv | segdup | * | 98.7367 | 98.4294 | 99.0458 | 94.5607 | 8398 | 134 | 8408 | 81 | 13 | 16.0494 | |
| gduggal-snapplat | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | tech_badpromoters | * | 89.0511 | 84.7222 | 93.8462 | 77.3519 | 61 | 11 | 61 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | * | * | 83.0264 | 83.4429 | 82.6139 | 57.1178 | 287491 | 57045 | 327755 | 68976 | 51941 | 75.3030 | |
| gduggal-snapvard | INDEL | * | HG002complexvar | * | 84.5803 | 84.0929 | 85.0735 | 55.5785 | 64696 | 12238 | 73113 | 12828 | 8678 | 67.6489 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | * | 47.5012 | 42.0784 | 54.5285 | 56.5286 | 12605 | 17351 | 24630 | 20539 | 16069 | 78.2365 | |
| gduggal-snapvard | INDEL | * | decoy | * | 40.5405 | 30.0000 | 62.5000 | 99.9717 | 3 | 7 | 5 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | func_cds | * | 83.0794 | 82.2472 | 83.9286 | 43.6242 | 366 | 79 | 423 | 81 | 65 | 80.2469 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.5774 | 33.9720 | 44.6273 | 63.2598 | 3422 | 6651 | 5395 | 6694 | 4337 | 64.7894 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.8789 | 11 | 9 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.9320 | 73.6508 | 76.2585 | 70.2157 | 69561 | 24886 | 122035 | 37993 | 31398 | 82.6415 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 57.9193 | 56.2153 | 59.7299 | 62.4801 | 36735 | 28612 | 56563 | 38135 | 29523 | 77.4171 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 59.8228 | 58.1169 | 61.6319 | 75.6941 | 1253 | 903 | 1624 | 1011 | 502 | 49.6538 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6897 | 64.7059 | 57.1429 | 99.8738 | 11 | 6 | 4 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 63.4268 | 61.9457 | 64.9805 | 71.6420 | 3171 | 1948 | 4342 | 2340 | 1455 | 62.1795 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 66.0556 | 65.0014 | 67.1446 | 72.1458 | 2355 | 1268 | 3278 | 1604 | 1089 | 67.8928 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.2123 | 28.3742 | 40.0394 | 54.5997 | 1726 | 4357 | 3049 | 4566 | 3071 | 67.2580 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 54.3999 | 51.2849 | 57.9178 | 44.7526 | 19438 | 18464 | 33023 | 23994 | 20921 | 87.1926 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 57.8592 | 55.4482 | 60.4894 | 43.6279 | 17739 | 14253 | 30010 | 19602 | 17898 | 91.3070 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 55.4931 | 52.6341 | 58.6805 | 53.0447 | 22809 | 20526 | 37552 | 26442 | 22338 | 84.4792 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 57.9193 | 56.2153 | 59.7299 | 62.4801 | 36735 | 28612 | 56563 | 38135 | 29523 | 77.4171 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 65.2231 | 63.7325 | 66.7851 | 42.6875 | 23321 | 13271 | 40773 | 20278 | 18291 | 90.2012 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.1444 | 17.6107 | 33.7493 | 43.2911 | 370 | 1731 | 649 | 1274 | 1040 | 81.6327 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4077 | 96.8613 | 95.9584 | 55.0491 | 27373 | 887 | 54846 | 2310 | 1901 | 82.2944 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 32.8464 | 22.5806 | 60.2273 | 99.9609 | 28 | 96 | 53 | 35 | 24 | 68.5714 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 65.0019 | 66.3696 | 63.6895 | 52.5107 | 13181 | 6679 | 19510 | 11123 | 7883 | 70.8712 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.1855 | 22.9755 | 36.4514 | 63.8922 | 610 | 2045 | 982 | 1712 | 1115 | 65.1285 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 73.1367 | 73.8749 | 72.4131 | 44.0488 | 4974 | 1759 | 7145 | 2722 | 2236 | 82.1455 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 34.4471 | 27.4775 | 46.1538 | 56.0976 | 61 | 161 | 108 | 126 | 89 | 70.6349 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | * | 85.1994 | 91.0429 | 80.0608 | 87.9508 | 1423 | 140 | 2108 | 525 | 180 | 34.2857 | |
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | * | 85.9341 | 89.2080 | 82.8920 | 85.9643 | 3199 | 387 | 4414 | 911 | 427 | 46.8716 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | * | 86.0203 | 89.1958 | 83.0632 | 86.5245 | 3294 | 399 | 4561 | 930 | 439 | 47.2043 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | * | 85.8099 | 88.8445 | 82.9757 | 86.6598 | 3337 | 419 | 4601 | 944 | 443 | 46.9280 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 40.4040 | 47.6190 | 35.0877 | 98.8711 | 20 | 22 | 20 | 37 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4411 | 88.2459 | 99.2862 | 62.0370 | 15158 | 2019 | 15162 | 109 | 22 | 20.1835 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 86.7685 | 79.7558 | 95.1333 | 68.7830 | 14502 | 3681 | 14524 | 743 | 84 | 11.3055 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.4760 | 30.0699 | 25.2941 | 98.0122 | 43 | 100 | 43 | 127 | 9 | 7.0866 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9496 | 78.1237 | 98.0235 | 54.2271 | 5746 | 1609 | 5753 | 116 | 13 | 11.2069 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.0526 | 44.4444 | 13.7931 | 96.4198 | 4 | 5 | 4 | 25 | 1 | 4.0000 | |