PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
651-700 / 86044 show all | |||||||||||||||
raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | homalt | 99.7837 | 99.6676 | 99.9000 | 65.8746 | 5997 | 20 | 5997 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | homalt | 99.7865 | 99.6758 | 99.8974 | 63.2172 | 5841 | 19 | 5841 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.6165 | 99.4147 | 99.8192 | 66.9456 | 2208 | 13 | 2208 | 4 | 2 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | homalt | 99.8494 | 99.7635 | 99.9354 | 60.9109 | 9280 | 22 | 9280 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | homalt | 99.8479 | 99.7612 | 99.9348 | 60.9327 | 9192 | 22 | 9192 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | homalt | 99.8450 | 99.7567 | 99.9335 | 58.3702 | 9021 | 22 | 9021 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 59.9142 | 3829 | 17 | 3829 | 4 | 2 | 50.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.6480 | 1309 | 2 | 1309 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 91.1111 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9819 | 99.9637 | 100.0000 | 35.9582 | 2757 | 1 | 2757 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9614 | 99.9743 | 99.9486 | 59.3220 | 3886 | 1 | 3886 | 2 | 2 | 100.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.3216 | 8 | 1 | 8 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7732 | 99.6038 | 99.9432 | 60.7007 | 1760 | 7 | 1760 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7326 | 99.5995 | 99.8661 | 79.1457 | 1492 | 6 | 1492 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4652 | 99.1471 | 99.7854 | 85.1071 | 465 | 4 | 465 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3062 | 98.8166 | 99.8008 | 85.8631 | 501 | 6 | 501 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.2963 | 95.1220 | 97.5000 | 91.1700 | 39 | 2 | 39 | 1 | 0 | 0.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6126 | 525 | 0 | 525 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1205 | 786 | 0 | 786 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 44.9657 | 481 | 0 | 481 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9306 | 99.8911 | 99.9703 | 61.3700 | 10086 | 11 | 10086 | 3 | 3 | 100.0000 | |
raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6183 | 99.6183 | 99.6183 | 63.0465 | 522 | 2 | 522 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.3003 | 1704 | 0 | 1704 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | tv | HG002compoundhet | homalt | 99.8228 | 99.7344 | 99.9113 | 42.6999 | 3379 | 9 | 3380 | 3 | 2 | 66.6667 | |
raldana-dualsentieon | SNP | tv | HG002complexvar | homalt | 99.9758 | 99.9632 | 99.9884 | 22.8157 | 95076 | 35 | 95070 | 11 | 9 | 81.8182 | |
raldana-dualsentieon | SNP | tv | * | homalt | 99.9865 | 99.9801 | 99.9928 | 19.7814 | 377048 | 75 | 377042 | 27 | 21 | 77.7778 | |
raldana-dualsentieon | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 40.8451 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
raldana-dualsentieon | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
raldana-dualsentieon | SNP | ti | segdup | homalt | 99.9134 | 99.8668 | 99.9600 | 87.2078 | 7495 | 10 | 7495 | 3 | 3 | 100.0000 | |
raldana-dualsentieon | SNP | ti | map_siren | homalt | 99.8878 | 99.8127 | 99.9630 | 48.3820 | 37845 | 71 | 37839 | 14 | 14 | 100.0000 | |
raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.4901 | 99.0971 | 99.8862 | 85.3999 | 1756 | 16 | 1756 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | homalt | 99.4834 | 99.0852 | 99.8847 | 85.3537 | 1733 | 16 | 1733 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.4375 | 99.0044 | 99.8745 | 84.1493 | 1591 | 16 | 1591 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | homalt | 98.9619 | 98.3945 | 99.5360 | 89.7625 | 429 | 7 | 429 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | homalt | 99.6939 | 99.4800 | 99.9086 | 69.7472 | 7653 | 40 | 7653 | 7 | 6 | 85.7143 | |
raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | homalt | 99.6974 | 99.4879 | 99.9077 | 69.7016 | 7577 | 39 | 7577 | 7 | 6 | 85.7143 | |
raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | homalt | 99.6923 | 99.4814 | 99.9041 | 67.2252 | 7289 | 38 | 7289 | 7 | 6 | 85.7143 | |
raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | homalt | 99.4913 | 99.1670 | 99.8177 | 71.1111 | 2738 | 23 | 2738 | 5 | 4 | 80.0000 | |
raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7684 | 99.6160 | 99.9212 | 64.9891 | 11414 | 44 | 11414 | 9 | 8 | 88.8889 | |
raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | homalt | 99.7663 | 99.6126 | 99.9205 | 64.9616 | 11314 | 44 | 11314 | 9 | 8 | 88.8889 | |
raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | homalt | 99.7597 | 99.6016 | 99.9183 | 62.2389 | 11001 | 44 | 11001 | 9 | 8 | 88.8889 |