PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
201-250 / 86044 show all
anovak-vgINDELD16_PLUSfunc_cds*
80.0000
66.6667
100.0000
60.0000
84800
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
37.1500
27.9605
55.3371
59.9550
5951533591477362
75.8910
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
28.5714
25.0000
33.3333
94.4444
13121
50.0000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
57.0334
48.7504
68.7072
56.9745
173618251706777550
70.7851
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
60.9623
54.4271
69.2810
72.5314
2091752129451
54.2553
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
25.0000
0.0000
96.2264
13021
50.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
81.1540
77.3058
85.4054
60.1508
63718763210859
54.6296
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
92.6984
90.4665
95.0431
49.8920
446474412312
52.1739
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
31.4802
22.9894
49.9162
51.5028
3031015298299239
79.9331
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
100.0000
0.0000
00100
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
43.4211
35.2336
56.5657
54.1348
113120791120860639
74.3023
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.8333
42.9384
59.3660
55.4700
8301103824564402
71.2766
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.7017
43.2260
64.3120
56.8434
175823091748970697
71.8557
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
50.4202
43.0804
60.7748
52.4011
7721020753486332
68.3128
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
28.7100
20.4082
48.3974
46.2069
150585151161125
77.6398
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
79.3685
71.2644
89.5522
70.7424
62256073
42.8571
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
49.6562
36.7647
76.4706
96.4620
25432687
87.5000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
51.7848
41.9187
67.7249
51.1628
402557384183140
76.5027
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
26.5368
18.6688
45.8678
43.7209
115501111131110
83.9695
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
54.9995
46.4968
67.3077
47.2081
7384703426
76.4706
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
29.8913
21.7391
47.8261
39.4737
103611129
75.0000
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD16_PLUSmap_l100_m0_e0*
52.3810
39.2857
78.5714
92.5532
11171133
100.0000
anovak-vgINDELD16_PLUSmap_l100_m1_e0*
52.2205
37.9310
83.7838
88.2166
33543165
83.3333
anovak-vgINDELD16_PLUSmap_l100_m2_e0*
52.2346
37.7778
84.6154
88.4956
34563365
83.3333
anovak-vgINDELD16_PLUSmap_l100_m2_e1*
50.6599
36.0825
85.0000
88.3721
35623465
83.3333
anovak-vgINDELD16_PLUSmap_l125_m0_e0*
50.0000
41.6667
62.5000
94.2857
57533
100.0000
anovak-vgINDELD16_PLUSmap_l125_m1_e0*
65.2174
55.5556
78.9474
91.3242
15121543
75.0000
anovak-vgINDELD16_PLUSmap_l125_m2_e0*
65.5738
55.5556
80.0000
91.3420
15121643
75.0000
anovak-vgINDELD16_PLUSmap_l125_m2_e1*
64.1711
53.5714
80.0000
91.5612
15131643
75.0000
anovak-vgINDELD16_PLUSmap_l150_m0_e0*
72.7273
57.1429
100.0000
96.6102
43400
anovak-vgINDELD16_PLUSmap_l150_m1_e0*
66.6667
53.3333
88.8889
94.7977
87811
100.0000
anovak-vgINDELD16_PLUSmap_l150_m2_e0*
66.6667
52.9412
90.0000
94.4751
98911
100.0000
anovak-vgINDELD16_PLUSmap_l150_m2_e1*
64.2857
50.0000
90.0000
94.5946
99911
100.0000
anovak-vgINDELD16_PLUSmap_l250_m0_e0*
100.0000
100.0000
100.0000
98.3871
10100
anovak-vgINDELD16_PLUSmap_l250_m1_e0*
57.1429
50.0000
66.6667
97.2477
22211
100.0000
anovak-vgINDELD16_PLUSmap_l250_m2_e0*
66.6667
60.0000
75.0000
96.5217
32311
100.0000
anovak-vgINDELD16_PLUSmap_l250_m2_e1*
66.6667
60.0000
75.0000
96.6387
32311
100.0000
anovak-vgINDELD16_PLUSmap_siren*
55.8559
43.3566
78.4810
82.5221
6281621714
82.3529
anovak-vgINDELD16_PLUSsegdup*
76.0605
68.9655
84.7826
91.5129
40183974
57.1429
anovak-vgINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
anovak-vgINDELD16_PLUStech_badpromoters*
33.3333
25.0000
50.0000
50.0000
13111
100.0000
anovak-vgINDELD1_5**
90.2130
89.2296
91.2183
56.6455
13094015805132532127599010
70.6168
anovak-vgINDELD1_5HG002complexvar*
91.1523
90.0107
92.3232
54.8532
2944732682978924771674
67.5818
anovak-vgINDELD1_5HG002compoundhet*
38.6407
34.4667
43.9649
65.5035
42178018485961934434
71.5970
anovak-vgINDELD1_5decoy*
77.4194
75.0000
80.0000
99.9469
31410
0.0000
anovak-vgINDELD1_5func_cds*
92.1630
92.4528
91.8750
37.7432
14712147139
69.2308