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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1551-1600 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | HG002complexvar | * | 97.5846 | 96.7748 | 98.4081 | 58.8477 | 5131 | 171 | 5131 | 83 | 77 | 92.7711 | |
| asubramanian-gatk | INDEL | D6_15 | HG002compoundhet | * | 94.5808 | 93.8213 | 95.3528 | 36.4670 | 8473 | 558 | 8474 | 413 | 394 | 95.3995 | |
| asubramanian-gatk | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9306 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 56.7010 | 42 | 1 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.5017 | 90.8883 | 94.1735 | 55.0486 | 3571 | 358 | 3572 | 221 | 201 | 90.9502 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0443 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6849 | 97.2767 | 98.0965 | 60.4473 | 15610 | 437 | 15615 | 303 | 282 | 93.0693 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.7435 | 96.0727 | 97.4237 | 57.9207 | 16977 | 694 | 16979 | 449 | 417 | 92.8731 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.1165 | 94.7368 | 97.5369 | 77.2676 | 198 | 11 | 198 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1002 | 98.6070 | 99.5984 | 66.0300 | 991 | 14 | 992 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3025 | 98.9571 | 99.6503 | 63.7669 | 854 | 9 | 855 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.0055 | 90.4209 | 93.6466 | 50.9768 | 2492 | 264 | 2491 | 169 | 156 | 92.3077 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4244 | 95.8506 | 97.0051 | 52.0671 | 13213 | 572 | 13215 | 408 | 385 | 94.3627 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.4970 | 97.1756 | 97.8206 | 52.8939 | 10769 | 313 | 10772 | 240 | 229 | 95.4167 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.5878 | 96.0095 | 97.1732 | 53.9900 | 14195 | 590 | 14197 | 413 | 388 | 93.9467 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.7435 | 96.0727 | 97.4237 | 57.9207 | 16977 | 694 | 16979 | 449 | 417 | 92.8731 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9932 | 96.6906 | 97.2976 | 45.4909 | 9145 | 313 | 9145 | 254 | 242 | 95.2756 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.1975 | 80.3556 | 86.2477 | 45.5627 | 949 | 232 | 947 | 151 | 143 | 94.7020 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4357 | 99.2481 | 99.6241 | 82.5115 | 264 | 2 | 265 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.7273 | 89.4737 | 96.2264 | 99.5017 | 51 | 6 | 51 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9354 | 98.2913 | 99.5879 | 51.8136 | 3624 | 63 | 3625 | 15 | 11 | 73.3333 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2278 | 94.9810 | 97.5078 | 52.7941 | 1249 | 66 | 1252 | 32 | 24 | 75.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3908 | 99.0173 | 99.7672 | 36.4175 | 1713 | 17 | 1714 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.1429 | 95.7746 | 98.5507 | 45.8824 | 136 | 6 | 136 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 93.0936 | 91.2621 | 95.0000 | 91.5896 | 94 | 9 | 95 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 93.4132 | 90.6977 | 96.2963 | 88.8224 | 234 | 24 | 234 | 9 | 3 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 93.3594 | 90.5303 | 96.3710 | 89.2314 | 239 | 25 | 239 | 9 | 3 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 93.4397 | 90.5455 | 96.5251 | 89.0301 | 249 | 26 | 250 | 9 | 3 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 94.3820 | 89.3617 | 100.0000 | 94.9766 | 42 | 5 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7368 | 92.3077 | 97.2973 | 92.3183 | 108 | 9 | 108 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 94.2623 | 91.2698 | 97.4576 | 92.5174 | 115 | 11 | 115 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 93.9271 | 90.6250 | 97.4790 | 92.6407 | 116 | 12 | 116 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 96.7742 | 93.7500 | 100.0000 | 95.5840 | 30 | 2 | 31 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 95.0454 | 91.7808 | 98.5507 | 94.0311 | 67 | 6 | 68 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.9446 | 91.4634 | 98.7013 | 94.0310 | 75 | 7 | 76 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 94.4860 | 90.5882 | 98.7342 | 94.0242 | 77 | 8 | 78 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 90.9091 | 83.3333 | 100.0000 | 97.6366 | 15 | 3 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 92.6829 | 86.3636 | 100.0000 | 97.4392 | 19 | 3 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 92.6829 | 86.3636 | 100.0000 | 97.5093 | 19 | 3 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_siren | * | 94.9597 | 92.5344 | 97.5155 | 86.4857 | 471 | 38 | 471 | 12 | 3 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | segdup | * | 96.0000 | 94.2408 | 97.8261 | 94.5287 | 180 | 11 | 180 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 51.4286 | 17 | 0 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | * | * | 95.8942 | 93.7431 | 98.1463 | 72.1669 | 5978 | 399 | 5983 | 113 | 95 | 84.0708 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.0837 | 95.3400 | 98.8924 | 68.3287 | 1248 | 61 | 1250 | 14 | 14 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | * | 92.8089 | 90.2940 | 95.4680 | 54.0308 | 1935 | 208 | 1938 | 92 | 88 | 95.6522 | |