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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
32.2581
2102100
hfeng-pmm2INDELI16_PLUSmap_l250_m2_e0homalt
0.0000
100.0000
00000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.2973
100.0000
94.7368
67.7966
3603622
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9852
100.0000
99.9704
37.6087
67450674522
100.0000
hfeng-pmm2SNPtimap_l150_m2_e0homalt
99.8031
99.8162
99.7900
73.1902
7602147602167
43.7500
hfeng-pmm3INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.9574
97.3744
96.5440
64.7133
21515821517774
96.1039
hfeng-pmm3INDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC1_5map_l125_m2_e0homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELD16_PLUSHG002complexvarhomalt
99.1334
98.9619
99.3056
74.9565
286328621
50.0000
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5273
99.6634
99.3915
39.2247
47371647372928
96.5517
hfeng-pmm3INDELD6_15map_l100_m2_e0homalt
98.4375
96.9231
100.0000
84.0909
6326300
hfeng-pmm3INDELI16_PLUSsegduphomalt
97.4359
100.0000
95.0000
93.9024
1901910
0.0000
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
68.8073
6806800
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
31.7808
27371273721
50.0000
hfeng-pmm3SNPtimap_l150_m2_e1homalt
99.7920
99.7790
99.8050
73.1684
7676177676156
40.0000
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.9723
97.9176
88.5025
64.8041
2163462163281274
97.5089
jlack-gatkINDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC1_5map_l125_m2_e0homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELD16_PLUSHG002complexvarhomalt
98.0936
97.9239
98.2639
75.8186
283628354
80.0000
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0972
99.7896
96.4613
40.7376
4743104743174174
100.0000
jlack-gatkINDELD6_15map_l100_m2_e0homalt
99.2248
98.4615
100.0000
85.7143
6416400
jlack-gatkINDELI16_PLUSsegduphomalt
100.0000
100.0000
100.0000
94.8370
1901900
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.5507
100.0000
97.1429
69.2982
6806822
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9087
99.8904
99.9269
30.4624
27353273522
100.0000
jlack-gatkSNPtimap_l250_m1_e0homalt
98.5516
97.3864
99.7451
85.8112
156542156543
75.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1022
99.6257
98.5842
64.7104
180986818104260243
93.4615
jli-customINDELC16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
0.0000
0.0000
0.0000
00000
jli-customINDELC1_5map_l250_m2_e1homalt
0.0000
0.0000
0.0000
00000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
45.3608
211021110
0.0000
jli-customINDELD1_5map_l100_m2_e0homalt
99.3443
99.1817
99.5074
82.7381
606560633
100.0000
jli-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5256
99.4746
97.5945
65.3571
56835681414
100.0000
jli-customINDELI6_15map_l125_m2_e0homalt
96.5517
93.3333
100.0000
91.6168
1411400
jli-customSNPtiHG002compoundhethomalt
99.9121
99.9324
99.8918
30.7138
73895738988
100.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8246
99.7050
99.9445
72.0298
540716540732
66.6667
jmaeng-gatkINDEL*map_l125_m1_e0homalt
98.9719
98.6339
99.3122
86.1207
7221072254
80.0000
jmaeng-gatkINDELC1_5*homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD16_PLUSmap_l100_m1_e0homalt
84.8485
93.3333
77.7778
95.3728
1411440
0.0000
jmaeng-gatkINDELD1_5map_sirenhomalt
99.3571
99.1438
99.5712
81.3141
115810116155
100.0000
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.5915
100.0000
97.2222
85.6574
3503511
100.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELI6_15map_l250_m0_e0homalt
0.0000
100.0000
01000
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8563
99.7624
99.9504
49.5168
10078241007855
100.0000