PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
ghariani-varprowlINDELI1_5map_l150_m1_e0homalt
97.2010
96.4646
97.9487
82.7586
191719142
50.0000
ghariani-varprowlINDELI1_5map_l150_m2_e0homalt
97.2431
96.5174
97.9798
85.0114
194719442
50.0000
ghariani-varprowlINDELI1_5map_l150_m2_e1homalt
97.2840
96.5686
98.0100
85.1661
197719742
50.0000
ghariani-varprowlINDELI1_5map_l250_m0_e0homalt
94.1176
88.8889
100.0000
96.8127
81800
ghariani-varprowlINDELI1_5map_l250_m1_e0homalt
94.1176
90.9091
97.5610
92.8070
4044011
100.0000
ghariani-varprowlINDELI1_5map_l250_m2_e0homalt
94.2529
91.1111
97.6190
93.8953
4144111
100.0000
ghariani-varprowlINDELI1_5map_l250_m2_e1homalt
94.3820
91.3043
97.6744
93.9266
4244211
100.0000
ghariani-varprowlINDELI1_5map_sirenhomalt
95.6739
94.8845
96.4765
70.7843
11506211504215
35.7143
ghariani-varprowlINDELI1_5segduphomalt
95.0538
93.4461
96.7177
90.8251
442314421511
73.3333
ghariani-varprowlINDELI1_5segdupwithalthomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI1_5tech_badpromotershomalt
86.9565
76.9231
100.0000
62.9630
1031000
ghariani-varprowlINDELI6_15*homalt
79.0493
68.3603
93.7006
43.2628
426519744269287252
87.8049
ghariani-varprowlINDELI6_15HG002complexvarhomalt
84.4108
80.1483
89.1522
51.9071
97324197811999
83.1933
ghariani-varprowlINDELI6_15HG002compoundhethomalt
11.7284
61.2903
6.4846
55.1988
191219274248
90.5109
ghariani-varprowlINDELI6_15decoyhomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI6_15func_cdshomalt
88.8889
80.0000
100.0000
33.3333
1231200
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.4059
50.8475
71.4286
81.4978
3029301212
100.0000
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.3305
56.2021
72.5296
71.5411
367286367139118
84.8921
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
62.9334
53.3333
76.7483
71.4713
440385439133119
89.4737
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
82.8571
80.5556
85.2941
66.0000
2972955
100.0000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
79.6040
75.0000
84.8101
64.2534
6923671212
100.0000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
78.5083
73.5294
84.2105
64.3750
50184899
100.0000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
12.5000
8.3333
25.0000
91.3978
222266
100.0000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
39.7661
32.2275
51.9084
77.2174
68143686354
85.7143
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
42.3077
35.1064
53.2258
74.8988
66122665849
84.4828
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
53.8527
45.9807
64.9770
74.1667
1431681417667
88.1579
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
62.9334
53.3333
76.7483
71.4713
440385439133119
89.4737
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
65.1163
73.2026
58.6387
74.4652
112411127962
78.4810
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
75.6674
63.2653
94.1176
81.0056
31183222
100.0000
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
68.6210
61.1111
78.2353
64.0592
132841333735
94.5946
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
91.3793
00055
100.0000
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
69.2308
61.0169
80.0000
61.2069
36233698
88.8889
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
ghariani-varprowlINDELI6_15lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI6_15map_l100_m0_e0homalt
81.8182
75.0000
90.0000
81.4815
93911
100.0000
ghariani-varprowlINDELI6_15map_l100_m1_e0homalt
82.7586
72.7273
96.0000
79.1667
2492411
100.0000
ghariani-varprowlINDELI6_15map_l100_m2_e0homalt
82.7586
72.7273
96.0000
81.3433
2492411
100.0000