PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotype F-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
gduggal-snapfbINDELD6_15map_l100_m2_e1homalt
81.6667
73.1343
92.4528
88.7712
49184944
100.0000
gduggal-snapfbINDELI16_PLUSsegdupwithalthomalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
21.4286
16.6667
30.0000
64.2857
420377
100.0000
gduggal-snapfbSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
20.0000
100.0000
11.1111
88.6792
202160
0.0000
gduggal-snapfbSNPtimap_l250_m0_e0homalt
95.6005
92.2018
99.2593
96.2789
4023440232
66.6667
gduggal-snapplatINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
99.9274
05100
gduggal-snapplatINDELC16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC1_5map_l125_m2_e1homalt
0.0000
100.0000
00000
gduggal-snapplatINDELD16_PLUSHG002compoundhethomalt
0.0000
0.0000
0.0000
08000
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
68.7702
67.0305
70.6027
63.8943
38081873547122781700
74.6269
gduggal-snapplatINDELD6_15map_l100_m2_e1homalt
45.9770
29.8507
100.0000
93.6364
20471400
gduggal-snapplatINDELI16_PLUSsegdupwithalthomalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
7.1429
4.1667
25.0000
86.6667
123132
66.6667
gduggal-snapplatSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
80.0000
100.0000
66.6667
97.1429
20211
100.0000
gduggal-snapplatSNPtimap_l250_m0_e0homalt
87.2580
77.7523
99.4118
93.2647
3399733822
100.0000
gduggal-snapvardINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
20.0000
100.0000
14000
gduggal-snapvardINDELC16_PLUSlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELC1_5map_l125_m2_e1homalt
0.0000
0.0000
100.0000
96.5418
001200
gduggal-snapvardINDELD16_PLUSHG002compoundhethomalt
0.0000
0.0000
0.0000
08000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
35.8293
22.1968
92.8622
57.9026
12614420130110093
93.0000
gduggal-snapvardINDELD6_15map_l100_m2_e1homalt
57.2597
41.7910
90.9091
76.9231
28393033
100.0000
gduggal-snapvardINDELI16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
100.0000
024000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
98.9796
20100
gduggal-snapvardSNPtimap_l250_m0_e0homalt
95.6171
92.6606
98.7685
92.5912
4043240154
80.0000
ghariani-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
33.3333
20.0000
100.0000
99.8936
14100
ghariani-varprowlINDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC1_5map_l125_m0_e0homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC6_15segdupwithalthomalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
90.0772
83.7398
97.4522
74.9001
3096030685
62.5000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELI16_PLUSmap_l150_m2_e0homalt
0.0000
100.0000
03000
ghariani-varprowlINDELI6_15func_cdshomalt
88.8889
80.0000
100.0000
33.3333
1231200
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.2427
99.4993
95.0863
76.1894
168908516913874433
49.5423
ghariani-varprowlSNPtimap_l125_m0_e0homalt
98.6718
97.5952
99.7724
69.9542
43831084383106
60.0000
ghariani-varprowlSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
55.1724
3813810
0.0000
hfeng-pmm1INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m0_e0homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_l250_m2_e1homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3399
20200
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
99.4819
100.0000
98.9691
42.0896
192019221
50.0000
hfeng-pmm1INDELI16_PLUSmap_l150_m2_e1homalt
85.7143
100.0000
75.0000
97.5155
30310
0.0000
hfeng-pmm1INDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
hfeng-pmm1SNPtimap_l125_m2_e1homalt
99.8210
99.7905
99.8515
68.6411
114342411434177
41.1765
hfeng-pmm2INDEL*HG002compoundhethomalt
70.6370
99.4169
54.7791
80.4614
6824682563558
99.1119
hfeng-pmm2INDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDELC1_5map_l100_m2_e1homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDELC6_15segdupwithalthomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.9157
96.0422
95.7895
59.7031
364153641616
100.0000