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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85901-85950 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | HG002compoundhet | homalt | 89.8311 | 99.8331 | 81.6508 | 42.6198 | 10764 | 18 | 10773 | 2421 | 2004 | 82.7757 | |
| ghariani-varprowl | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | func_cds | homalt | 99.8569 | 99.9570 | 99.7569 | 23.2466 | 6976 | 3 | 6976 | 17 | 12 | 70.5882 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4028 | 99.6568 | 95.2485 | 71.4664 | 1742 | 6 | 1744 | 87 | 49 | 56.3218 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8360 | 99.8663 | 95.8865 | 61.2690 | 20172 | 27 | 20210 | 867 | 535 | 61.7070 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.2427 | 99.4993 | 95.0863 | 76.1894 | 16890 | 85 | 16913 | 874 | 433 | 49.5423 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.1063 | 99.9378 | 98.2885 | 58.1479 | 1608 | 1 | 1608 | 28 | 18 | 64.2857 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.8162 | 99.9112 | 97.7450 | 61.5346 | 2250 | 2 | 2254 | 52 | 32 | 61.5385 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.8939 | 99.9277 | 97.8814 | 65.9861 | 1382 | 1 | 1386 | 30 | 18 | 60.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 79.8224 | 95.4545 | 68.5897 | 91.7504 | 105 | 5 | 107 | 49 | 27 | 55.1020 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.5820 | 98.8433 | 75.4582 | 85.6686 | 940 | 11 | 947 | 308 | 190 | 61.6883 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.2766 | 99.2958 | 76.2757 | 84.3842 | 846 | 6 | 852 | 265 | 167 | 63.0189 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3583 | 99.6679 | 91.4059 | 82.1531 | 3902 | 13 | 3914 | 368 | 228 | 61.9565 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.2427 | 99.4993 | 95.0863 | 76.1894 | 16890 | 85 | 16913 | 874 | 433 | 49.5423 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.6830 | 99.7395 | 90.1145 | 68.5511 | 3446 | 9 | 3464 | 380 | 233 | 61.3158 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 96.3731 | 14 | 1 | 14 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9200 | 99.9179 | 97.9418 | 56.8515 | 6083 | 5 | 6091 | 128 | 59 | 46.0938 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4008 | 99.8073 | 97.0334 | 44.7618 | 6732 | 13 | 6738 | 206 | 131 | 63.5922 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.7251 | 92.6829 | 68.4211 | 93.1408 | 38 | 3 | 39 | 18 | 6 | 33.3333 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8634 | 100.0000 | 97.7524 | 37.9730 | 2738 | 0 | 2740 | 63 | 41 | 65.0794 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | homalt | 98.8809 | 98.0895 | 99.6851 | 64.3445 | 11398 | 222 | 11398 | 36 | 21 | 58.3333 | |
| ghariani-varprowl | SNP | * | map_l100_m1_e0 | homalt | 99.3219 | 98.9853 | 99.6607 | 61.9023 | 26729 | 274 | 26729 | 91 | 64 | 70.3297 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | homalt | 99.3166 | 99.0008 | 99.6343 | 64.4739 | 27248 | 275 | 27248 | 100 | 67 | 67.0000 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | homalt | 99.3161 | 99.0071 | 99.6271 | 64.4501 | 27520 | 276 | 27520 | 103 | 68 | 66.0194 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5153 | 97.3778 | 99.6797 | 71.5507 | 6536 | 176 | 6536 | 21 | 10 | 47.6190 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | homalt | 99.0868 | 98.5271 | 99.6530 | 67.5166 | 16656 | 249 | 16656 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | homalt | 99.1058 | 98.5554 | 99.6624 | 70.0500 | 17124 | 251 | 17124 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | homalt | 99.1110 | 98.5626 | 99.6655 | 70.0625 | 17280 | 252 | 17280 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.0930 | 68.8889 | 75.6098 | 76.1628 | 31 | 14 | 31 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 70.3704 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 93.3333 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.1176 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.1176 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||