PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85851-85900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.9871 | 99.9318 | 98.0602 | 53.4268 | 1465 | 1 | 1466 | 29 | 19 | 65.5172 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9631 | 100.0000 | 97.9475 | 55.8853 | 858 | 0 | 859 | 18 | 12 | 66.6667 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 77.6739 | 95.6522 | 65.3846 | 90.8852 | 66 | 3 | 68 | 36 | 17 | 47.2222 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 82.1159 | 98.1982 | 70.5600 | 84.9325 | 436 | 8 | 441 | 184 | 107 | 58.1522 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 82.8586 | 98.6945 | 71.4019 | 83.3644 | 378 | 5 | 382 | 153 | 93 | 60.7843 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.4729 | 99.6276 | 91.6509 | 80.5506 | 2408 | 9 | 2415 | 220 | 130 | 59.0909 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.6620 | 99.4893 | 95.9007 | 73.2635 | 11493 | 59 | 11510 | 492 | 263 | 53.4553 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.8322 | 99.5261 | 88.7546 | 70.2144 | 1680 | 8 | 1689 | 214 | 129 | 60.2804 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1675 | 99.9091 | 98.4368 | 44.5929 | 2199 | 2 | 2204 | 35 | 13 | 37.1429 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.6127 | 99.7743 | 97.4780 | 44.0701 | 3978 | 9 | 3981 | 103 | 61 | 59.2233 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.3873 | 91.4286 | 73.3333 | 93.3628 | 32 | 3 | 33 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4433 | 100.0000 | 98.8927 | 33.8067 | 1427 | 0 | 1429 | 16 | 9 | 56.2500 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.8276 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 98.9754 | 98.1605 | 99.8038 | 62.7769 | 7631 | 143 | 7631 | 15 | 10 | 66.6667 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4271 | 99.0479 | 99.8092 | 60.5686 | 17789 | 171 | 17789 | 34 | 26 | 76.4706 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | homalt | 99.4217 | 99.0660 | 99.7800 | 63.1898 | 18138 | 171 | 18138 | 40 | 28 | 70.0000 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | homalt | 99.4248 | 99.0700 | 99.7822 | 63.1662 | 18322 | 172 | 18322 | 40 | 28 | 70.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m0_e0 | homalt | 98.6718 | 97.5952 | 99.7724 | 69.9542 | 4383 | 108 | 4383 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | homalt | 99.2029 | 98.5967 | 99.8167 | 66.5358 | 10890 | 155 | 10890 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e0 | homalt | 99.2250 | 98.6353 | 99.8218 | 69.1124 | 11203 | 155 | 11203 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e1 | homalt | 99.2318 | 98.6472 | 99.8234 | 69.1261 | 11303 | 155 | 11303 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3468 | 96.9576 | 99.7764 | 75.9674 | 2677 | 84 | 2677 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 98.9885 | 98.1711 | 99.8196 | 71.5110 | 7193 | 134 | 7193 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0272 | 98.2405 | 99.8266 | 73.7644 | 7482 | 134 | 7482 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0304 | 98.2452 | 99.8283 | 73.7883 | 7558 | 135 | 7558 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | homalt | 97.7830 | 96.1009 | 99.5249 | 92.4308 | 419 | 17 | 419 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.4815 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 86.8421 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 83.5616 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 86.0465 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | homalt | 81.4815 | 73.3333 | 91.6667 | 86.3636 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.0000 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 95.0820 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 92.3077 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.8750 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.9697 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.0588 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_siren | homalt | 81.7610 | 72.2222 | 94.2029 | 76.1246 | 65 | 25 | 65 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I6_15 | segdup | homalt | 84.2758 | 74.4681 | 97.0588 | 90.1449 | 35 | 12 | 33 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | * | homalt | 99.7891 | 99.9588 | 99.6200 | 19.7823 | 1179670 | 486 | 1179792 | 4500 | 2208 | 49.0667 | |
| ghariani-varprowl | SNP | * | HG002complexvar | homalt | 99.6051 | 99.9428 | 99.2696 | 21.6199 | 288407 | 165 | 288526 | 2123 | 1441 | 67.8756 | |