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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1693 1694 1695 1696 1697 1698 1699 1700 1701 ... 1720 1721 » 84801-84850 / 86044 show all
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3118	98.6330	100.0000	85.2817	938	13	938	0	0
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5283	99.0610	100.0000	84.2066	844	8	844	0	0
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7696	99.5402	100.0000	80.2993	3897	18	3897	0	0
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8880	99.8233	99.9528	71.8323	16945	30	16945	8	5	62.5000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.3120	3444	11	3444	1	1	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	92.8571	86.6667	100.0000	96.2428	13	2	13	0	0
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9589	99.9507	99.9671	54.6457	6085	3	6085	2	2	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9703	99.9703	99.9703	36.7854	6743	2	6743	2	2	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	96.2963	95.1220	97.5000	93.0314	39	2	39	1	1	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	32.6526	2736	2	2736	1	1	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	96.9697	2	0	2	0	0
hfeng-pmm1	SNP	*	map_l100_m0_e0	homalt	99.7374	99.7074	99.7675	63.8562	11586	34	11586	27	10	37.0370
hfeng-pmm1	SNP	*	map_l100_m1_e0	homalt	99.8556	99.8408	99.8703	60.9594	26960	43	26960	35	17	48.5714
hfeng-pmm1	SNP	*	map_l100_m2_e0	homalt	99.8583	99.8438	99.8728	63.3749	27480	43	27480	35	17	48.5714
hfeng-pmm1	SNP	*	map_l100_m2_e1	homalt	99.8597	99.8453	99.8740	63.3660	27753	43	27753	35	17	48.5714
hfeng-pmm1	SNP	*	map_l125_m0_e0	homalt	99.6052	99.5977	99.6126	70.8610	6685	27	6685	26	9	34.6154
hfeng-pmm1	SNP	*	map_l125_m1_e0	homalt	99.8048	99.7870	99.8225	66.5790	16869	36	16869	30	12	40.0000
hfeng-pmm1	SNP	*	map_l125_m2_e0	homalt	99.8100	99.7928	99.8273	69.0265	17339	36	17339	30	12	40.0000
hfeng-pmm1	SNP	*	map_l125_m2_e1	homalt	99.8117	99.7947	99.8288	69.0610	17496	36	17496	30	12	40.0000
hfeng-pmm1	SNP	*	map_l150_m0_e0	homalt	99.5848	99.7065	99.4633	76.6851	4077	12	4077	22	7	31.8182
hfeng-pmm1	SNP	*	map_l150_m1_e0	homalt	99.7516	99.7427	99.7604	71.3075	11244	29	11244	27	10	37.0370
hfeng-pmm1	SNP	*	map_l150_m2_e0	homalt	99.7606	99.7521	99.7692	73.4870	11670	29	11670	27	10	37.0370
hfeng-pmm1	SNP	*	map_l150_m2_e1	homalt	99.7632	99.7548	99.7717	73.5145	11798	29	11798	27	10	37.0370
hfeng-pmm1	SNP	*	map_l250_m0_e0	homalt	98.8924	99.3641	98.4252	92.6624	625	4	625	10	5	50.0000
hfeng-pmm1	SNP	*	map_l250_m1_e0	homalt	99.4527	99.5940	99.3117	86.9979	2453	10	2453	17	6	35.2941
hfeng-pmm1	SNP	*	map_l250_m2_e0	homalt	99.4794	99.5905	99.3685	87.8799	2675	11	2675	17	6	35.2941
hfeng-pmm1	SNP	*	map_l250_m2_e1	homalt	99.4855	99.5953	99.3759	87.9341	2707	11	2707	17	6	35.2941
hfeng-pmm1	SNP	*	map_siren	homalt	99.8994	99.8803	99.9184	53.4037	55090	66	55084	45	26	57.7778
hfeng-pmm1	SNP	*	segdup	homalt	99.9256	99.9535	99.8977	88.8973	10738	5	10738	11	11	100.0000
hfeng-pmm1	SNP	*	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	49.3671	80	0	80	0	0
hfeng-pmm1	SNP	ti	*	homalt	99.9926	99.9908	99.9944	16.6970	802964	74	802957	45	35	77.7778
hfeng-pmm1	SNP	ti	HG002complexvar	homalt	99.9845	99.9798	99.9891	18.4732	193424	39	193416	21	21	100.0000
hfeng-pmm1	SNP	ti	HG002compoundhet	homalt	99.9392	99.9594	99.9189	30.5967	7391	3	7391	6	6	100.0000
hfeng-pmm1	SNP	ti	decoy	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	ti	func_cds	homalt	99.9905	99.9810	100.0000	20.7037	5274	1	5274	0	0
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6721	99.3464	100.0000	64.9669	1216	8	1216	0	0
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9703	99.9604	99.9802	50.4100	10098	4	10098	2	2	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.9134	99.8615	99.9653	69.5900	11536	16	11536	4	3	75.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.9264	1123	5	1123	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	45.7608	1465	1	1465	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	47.9369	858	0	858	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	97.7778	95.6522	100.0000	91.3158	66	3	66	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0

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