PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1691 1692 1693 1694 1695 1696 1697 1698 1699 ... 1720 1721 » 84701-84750 / 86044 show all
hfeng-pmm2	INDEL	*	map_l150_m2_e0	homalt	99.0654	99.1684	98.9627	88.3152	477	4	477	5	3	60.0000
hfeng-pmm2	INDEL	*	map_l150_m2_e1	homalt	98.9858	99.1870	98.7854	88.2938	488	4	488	6	4	66.6667
hfeng-pmm2	INDEL	*	map_l250_m0_e0	homalt	96.0000	96.0000	96.0000	97.1655	24	1	24	1	1	100.0000
hfeng-pmm2	INDEL	*	map_l250_m1_e0	homalt	98.1651	98.1651	98.1651	94.2144	107	2	107	2	2	100.0000
hfeng-pmm2	INDEL	*	map_l250_m2_e0	homalt	98.2609	98.2609	98.2609	94.7513	113	2	113	2	2	100.0000
hfeng-pmm2	INDEL	*	map_l250_m2_e1	homalt	98.2759	98.2759	98.2759	94.8444	114	2	114	2	2	100.0000
hfeng-pmm2	INDEL	*	map_siren	homalt	99.3610	99.4350	99.2871	79.4763	2640	15	2646	19	12	63.1579
hfeng-pmm2	INDEL	*	segdup	homalt	99.6360	99.7917	99.4808	93.2596	958	2	958	5	4	80.0000
hfeng-pmm2	INDEL	*	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	54.7945	33	0	33	0	0
hfeng-pmm2	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	HG002complexvar	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	decoy	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	func_cds	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	97.5000	95.1220	100.0000	91.9255	39	2	39	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2048	98.4221	100.0000	85.8880	499	8	499	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3562	98.7207	100.0000	85.0452	463	6	463	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7323	99.4660	100.0000	82.1364	1490	8	1490	0	0
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8339	99.7418	99.9261	75.6588	5409	14	5409	4	2	50.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7164	99.4907	99.9431	61.2384	1758	9	1758	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	homalt	87.5000	77.7778	100.0000	95.7831	7	2	7	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9743	99.9743	99.9743	59.5146	3886	1	3886	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	37.0751	2756	2	2756	2	2	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	homalt	92.3077	100.0000	85.7143	92.0455	6	0	6	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9237	99.8474	100.0000	35.1338	1309	2	1309	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge