PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83651-83700 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.3969 | 79.4375 | 99.6342 | 42.5683 | 2175 | 563 | 2179 | 8 | 4 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | homalt | 93.3571 | 87.6248 | 99.8920 | 65.0376 | 10182 | 1438 | 10176 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | homalt | 95.8529 | 92.1009 | 99.9236 | 61.4019 | 24870 | 2133 | 24854 | 19 | 14 | 73.6842 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | homalt | 95.9129 | 92.2138 | 99.9212 | 63.8760 | 25380 | 2143 | 25364 | 20 | 15 | 75.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | homalt | 95.9332 | 92.2507 | 99.9220 | 63.8706 | 25642 | 2154 | 25625 | 20 | 15 | 75.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | homalt | 91.2357 | 83.9839 | 99.8583 | 72.7044 | 5637 | 1075 | 5637 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | homalt | 94.1655 | 89.0269 | 99.9336 | 67.4179 | 15050 | 1855 | 15040 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | homalt | 94.2904 | 89.2489 | 99.9355 | 69.8671 | 15507 | 1868 | 15497 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | homalt | 94.3221 | 89.3053 | 99.9361 | 69.8871 | 15657 | 1875 | 15646 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | homalt | 89.7981 | 81.5847 | 99.8503 | 78.9397 | 3336 | 753 | 3336 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | homalt | 92.6495 | 86.3745 | 99.9076 | 72.5432 | 9737 | 1536 | 9728 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | homalt | 92.8770 | 86.7681 | 99.9113 | 74.6788 | 10151 | 1548 | 10142 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | homalt | 92.9111 | 86.8268 | 99.9123 | 74.6875 | 10269 | 1558 | 10259 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m0_e0 | homalt | 86.7142 | 76.7886 | 99.5868 | 94.0431 | 483 | 146 | 482 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | homalt | 87.5513 | 77.9537 | 99.8439 | 88.7661 | 1920 | 543 | 1919 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | homalt | 88.2609 | 79.0767 | 99.8589 | 89.3960 | 2124 | 562 | 2123 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | homalt | 88.3005 | 79.1391 | 99.8607 | 89.4279 | 2151 | 567 | 2150 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_siren | homalt | 97.4154 | 95.0214 | 99.9332 | 54.3867 | 52410 | 2746 | 52361 | 35 | 23 | 65.7143 | |
| gduggal-snapplat | SNP | * | segdup | homalt | 99.4486 | 99.0692 | 99.8310 | 88.7280 | 10643 | 100 | 10636 | 18 | 13 | 72.2222 | |
| gduggal-snapplat | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 54.6053 | 69 | 11 | 69 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | * | homalt | 99.4971 | 99.0644 | 99.9337 | 17.3977 | 795526 | 7513 | 795327 | 528 | 217 | 41.0985 | |
| gduggal-snapplat | SNP | ti | HG002complexvar | homalt | 99.0919 | 98.3790 | 99.8152 | 19.4474 | 190328 | 3136 | 190130 | 352 | 203 | 57.6705 | |
| gduggal-snapplat | SNP | ti | HG002compoundhet | homalt | 95.6482 | 94.5361 | 96.7868 | 36.7388 | 6990 | 404 | 6928 | 230 | 158 | 68.6957 | |
| gduggal-snapplat | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | func_cds | homalt | 99.7435 | 99.5071 | 99.9810 | 20.2128 | 5249 | 26 | 5249 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0245 | 92.0752 | 98.1691 | 77.4877 | 1127 | 97 | 1126 | 21 | 11 | 52.3810 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.7199 | 87.6559 | 98.4048 | 61.6199 | 8855 | 1247 | 8883 | 144 | 56 | 38.8889 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 92.9747 | 88.1319 | 98.3807 | 75.7191 | 10181 | 1371 | 10207 | 168 | 59 | 35.1190 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8855 | 96.4539 | 99.3601 | 62.1846 | 1088 | 40 | 1087 | 7 | 3 | 42.8571 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.4542 | 90.5866 | 98.6667 | 57.1156 | 1328 | 138 | 1332 | 18 | 5 | 27.7778 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.4174 | 87.2960 | 98.1771 | 57.2145 | 749 | 109 | 754 | 14 | 4 | 28.5714 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 39.1304 | 69.2308 | 97.4017 | 27 | 42 | 27 | 12 | 6 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 66.9912 | 56.0811 | 83.1715 | 93.2356 | 249 | 195 | 257 | 52 | 22 | 42.3077 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 69.4882 | 58.7467 | 85.0365 | 91.8258 | 225 | 158 | 233 | 41 | 17 | 41.4634 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.0644 | 85.9330 | 96.8475 | 84.2543 | 2077 | 340 | 2089 | 68 | 28 | 41.1765 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 92.9747 | 88.1319 | 98.3807 | 75.7191 | 10181 | 1371 | 10207 | 168 | 59 | 35.1190 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.9295 | 80.9834 | 93.8179 | 77.6360 | 1367 | 321 | 1381 | 91 | 39 | 42.8571 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2935 | 94.7297 | 100.0000 | 44.7856 | 2085 | 116 | 2086 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.2399 | 86.3055 | 99.0506 | 51.0836 | 3441 | 546 | 3443 | 33 | 14 | 42.4242 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 38.4615 | 28.5714 | 58.8235 | 98.1006 | 10 | 25 | 10 | 7 | 4 | 57.1429 | |