PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
601-650 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.9774 | 97.8472 | 98.1079 | 69.1926 | 1409 | 31 | 1400 | 27 | 11 | 40.7407 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.6904 | 70.9091 | 61.1872 | 88.2131 | 117 | 48 | 134 | 85 | 29 | 34.1176 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 80.3562 | 86.2869 | 75.1884 | 83.1152 | 1227 | 195 | 1397 | 461 | 231 | 50.1085 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 82.2656 | 88.2213 | 77.0631 | 82.3781 | 1116 | 149 | 1270 | 378 | 203 | 53.7037 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.6695 | 93.1741 | 88.2960 | 82.0927 | 3863 | 283 | 4021 | 533 | 266 | 49.9062 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 89.3755 | 92.9518 | 86.0642 | 79.3543 | 13544 | 1027 | 13809 | 2236 | 557 | 24.9106 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.6443 | 95.4077 | 91.9449 | 64.3247 | 4633 | 223 | 4874 | 427 | 230 | 53.8642 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 59.2384 | 57.6923 | 60.8696 | 95.4092 | 15 | 11 | 14 | 9 | 5 | 55.5556 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.6411 | 98.1762 | 97.1119 | 60.4037 | 10712 | 199 | 11029 | 328 | 130 | 39.6341 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7152 | 97.3162 | 96.1216 | 41.6514 | 7252 | 200 | 7336 | 296 | 141 | 47.6351 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.6217 | 78.5714 | 52.0548 | 84.3011 | 33 | 9 | 38 | 35 | 10 | 28.5714 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2061 | 97.3623 | 97.0504 | 40.0412 | 3359 | 91 | 3389 | 103 | 49 | 47.5728 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 94.5205 | 1 | 0 | 2 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | map_l100_m0_e0 | * | 81.2819 | 86.2414 | 76.8618 | 75.7478 | 9559 | 1525 | 9547 | 2874 | 784 | 27.2791 | |
| anovak-vg | SNP | tv | map_l100_m1_e0 | * | 83.4211 | 89.3066 | 78.2634 | 70.1430 | 21881 | 2620 | 21848 | 6068 | 1313 | 21.6381 | |
| anovak-vg | SNP | tv | map_l100_m2_e0 | * | 83.6288 | 89.4260 | 78.5375 | 71.8835 | 22386 | 2647 | 22351 | 6108 | 1319 | 21.5946 | |
| anovak-vg | SNP | tv | map_l100_m2_e1 | * | 83.6965 | 89.4751 | 78.6189 | 71.8943 | 22622 | 2661 | 22577 | 6140 | 1324 | 21.5635 | |
| anovak-vg | SNP | tv | map_l125_m0_e0 | * | 78.9708 | 83.7129 | 74.7373 | 81.6028 | 5551 | 1080 | 5547 | 1875 | 540 | 28.8000 | |
| anovak-vg | SNP | tv | map_l125_m1_e0 | * | 80.6396 | 87.4563 | 74.8088 | 74.7170 | 14007 | 2009 | 13984 | 4709 | 1051 | 22.3190 | |
| anovak-vg | SNP | tv | map_l125_m2_e0 | * | 80.8739 | 87.5311 | 75.1578 | 76.3071 | 14433 | 2056 | 14410 | 4763 | 1075 | 22.5698 | |
| anovak-vg | SNP | tv | map_l125_m2_e1 | * | 80.9704 | 87.5908 | 75.2805 | 76.3445 | 14590 | 2067 | 14560 | 4781 | 1080 | 22.5894 | |
| anovak-vg | SNP | tv | map_l150_m0_e0 | * | 77.9452 | 82.2472 | 74.0709 | 86.1595 | 3433 | 741 | 3428 | 1200 | 357 | 29.7500 | |
| anovak-vg | SNP | tv | map_l150_m1_e0 | * | 79.0094 | 85.9421 | 73.1117 | 78.8881 | 9378 | 1534 | 9370 | 3446 | 807 | 23.4185 | |
| anovak-vg | SNP | tv | map_l150_m2_e0 | * | 79.2839 | 86.0062 | 73.5363 | 80.1925 | 9766 | 1589 | 9759 | 3512 | 838 | 23.8610 | |
| anovak-vg | SNP | tv | map_l150_m2_e1 | * | 79.4082 | 86.0633 | 73.7085 | 80.2069 | 9899 | 1603 | 9888 | 3527 | 846 | 23.9864 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | * | 73.9996 | 77.6471 | 70.6794 | 95.9856 | 594 | 171 | 593 | 246 | 53 | 21.5447 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | * | 73.3649 | 80.4307 | 67.4404 | 91.1516 | 2129 | 518 | 2121 | 1024 | 234 | 22.8516 | |
| anovak-vg | SNP | tv | map_l250_m2_e0 | * | 73.9754 | 80.6384 | 68.3294 | 91.4956 | 2324 | 558 | 2315 | 1073 | 260 | 24.2311 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | * | 74.0862 | 80.7956 | 68.4057 | 91.5330 | 2356 | 560 | 2347 | 1084 | 260 | 23.9852 | |
| anovak-vg | SNP | tv | map_siren | * | 87.1130 | 91.2040 | 83.3733 | 62.1288 | 41890 | 4040 | 41755 | 8327 | 1807 | 21.7005 | |
| anovak-vg | SNP | tv | segdup | * | 97.7325 | 97.6676 | 97.7974 | 93.3295 | 8333 | 199 | 8303 | 187 | 80 | 42.7807 | |
| anovak-vg | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | tech_badpromoters | * | 89.6729 | 84.7222 | 95.2381 | 42.7273 | 61 | 11 | 60 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | * | * | * | 99.3424 | 99.2404 | 99.4446 | 59.9126 | 341925 | 2617 | 341788 | 1909 | 1550 | 81.1943 | |
| astatham-gatk | INDEL | * | HG002complexvar | * | 99.4827 | 99.2916 | 99.6745 | 58.3541 | 76393 | 545 | 76257 | 249 | 212 | 85.1406 | |
| astatham-gatk | INDEL | * | HG002compoundhet | * | 95.0088 | 94.7931 | 95.2256 | 62.9264 | 28400 | 1560 | 28282 | 1418 | 1407 | 99.2243 | |
| astatham-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9347 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | * | func_cds | * | 99.5531 | 99.7753 | 99.3318 | 44.9080 | 444 | 1 | 446 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.9849 | 94.4009 | 95.5762 | 69.0899 | 9509 | 564 | 9355 | 433 | 393 | 90.7621 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3816 | 20 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1675 | 99.0429 | 99.2924 | 73.5960 | 93545 | 904 | 93452 | 666 | 582 | 87.3874 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2824 | 98.0398 | 98.5261 | 67.2886 | 64070 | 1281 | 63840 | 955 | 849 | 88.9005 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8091 | 97.3562 | 98.2662 | 76.6111 | 2099 | 57 | 2097 | 37 | 20 | 54.0541 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4518 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5798 | 99.5507 | 99.6089 | 75.0780 | 5096 | 23 | 5094 | 20 | 10 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7930 | 99.8068 | 99.7792 | 75.7754 | 3616 | 7 | 3616 | 8 | 3 | 37.5000 | |