PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
551-600 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4762 | 96.4847 | 96.4677 | 49.2144 | 3870 | 141 | 3960 | 145 | 74 | 51.0345 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.9502 | 97.0480 | 96.8526 | 49.3747 | 2367 | 72 | 2431 | 79 | 39 | 49.3671 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 68.6189 | 80.5430 | 59.7701 | 87.2900 | 178 | 43 | 208 | 140 | 52 | 37.1429 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 76.6177 | 84.7222 | 69.9283 | 81.0889 | 1098 | 198 | 1365 | 587 | 286 | 48.7223 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.1375 | 85.3261 | 72.0660 | 79.7424 | 942 | 162 | 1179 | 457 | 238 | 52.0788 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.5350 | 93.7209 | 89.4487 | 79.3835 | 6239 | 418 | 6587 | 777 | 381 | 49.0347 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.7748 | 94.4594 | 87.3670 | 66.7807 | 4569 | 268 | 5007 | 724 | 345 | 47.6519 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.9231 | 75.0000 | 78.9474 | 96.1538 | 12 | 4 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3610 | 98.4844 | 98.2380 | 45.9412 | 6173 | 95 | 6300 | 113 | 46 | 40.7080 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.2926 | 96.8040 | 95.7866 | 41.7994 | 10389 | 343 | 10503 | 462 | 244 | 52.8139 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 61.5814 | 69.3069 | 55.4054 | 91.6337 | 70 | 31 | 82 | 66 | 26 | 39.3939 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.3224 | 97.0558 | 97.5904 | 32.2861 | 3791 | 115 | 3807 | 94 | 61 | 64.8936 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.5000 | 62.5000 | 62.5000 | 94.8718 | 5 | 3 | 5 | 3 | 2 | 66.6667 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | map_l100_m0_e0 | * | 81.1499 | 85.0168 | 77.6195 | 74.1271 | 18509 | 3262 | 18364 | 5295 | 1408 | 26.5911 | |
| anovak-vg | SNP | ti | map_l100_m1_e0 | * | 84.3963 | 88.5106 | 80.6475 | 68.7475 | 42424 | 5507 | 42052 | 10091 | 2274 | 22.5349 | |
| anovak-vg | SNP | ti | map_l100_m2_e0 | * | 84.5385 | 88.5991 | 80.8339 | 70.4808 | 43379 | 5582 | 43002 | 10196 | 2298 | 22.5383 | |
| anovak-vg | SNP | ti | map_l100_m2_e1 | * | 84.6108 | 88.6390 | 80.9329 | 70.4744 | 43863 | 5622 | 43482 | 10244 | 2310 | 22.5498 | |
| anovak-vg | SNP | ti | map_l125_m0_e0 | * | 79.1475 | 83.1766 | 75.4908 | 80.4095 | 10615 | 2147 | 10537 | 3421 | 933 | 27.2727 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | * | 81.2273 | 86.8110 | 76.3184 | 74.3923 | 25466 | 3869 | 25253 | 7836 | 1746 | 22.2818 | |
| anovak-vg | SNP | ti | map_l125_m2_e0 | * | 81.4788 | 86.9291 | 76.6717 | 75.9478 | 26303 | 3955 | 26086 | 7937 | 1770 | 22.3006 | |
| anovak-vg | SNP | ti | map_l125_m2_e1 | * | 81.5574 | 87.0097 | 76.7480 | 75.9636 | 26598 | 3971 | 26376 | 7991 | 1774 | 22.2000 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | * | 77.7546 | 81.7199 | 74.1564 | 85.3644 | 6424 | 1437 | 6373 | 2221 | 611 | 27.5101 | |
| anovak-vg | SNP | ti | map_l150_m1_e0 | * | 79.4593 | 85.7346 | 74.0400 | 78.6204 | 16900 | 2812 | 16756 | 5875 | 1329 | 22.6213 | |
| anovak-vg | SNP | ti | map_l150_m2_e0 | * | 79.7989 | 85.9302 | 74.4843 | 79.9053 | 17626 | 2886 | 17477 | 5987 | 1363 | 22.7660 | |
| anovak-vg | SNP | ti | map_l150_m2_e1 | * | 79.8681 | 86.0107 | 74.5445 | 79.9452 | 17824 | 2899 | 17673 | 6035 | 1369 | 22.6843 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | * | 72.4774 | 77.4453 | 68.1085 | 95.7045 | 1061 | 309 | 1055 | 494 | 111 | 22.4696 | |
| anovak-vg | SNP | ti | map_l250_m1_e0 | * | 74.8997 | 81.6117 | 69.2079 | 91.2986 | 3737 | 842 | 3722 | 1656 | 368 | 22.2222 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | * | 75.7617 | 82.2684 | 70.2088 | 91.5692 | 4120 | 888 | 4103 | 1741 | 394 | 22.6307 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | * | 75.8245 | 82.3089 | 70.2872 | 91.6096 | 4178 | 898 | 4161 | 1759 | 398 | 22.6265 | |
| anovak-vg | SNP | ti | map_siren | * | 88.3716 | 90.3532 | 86.4749 | 58.5181 | 90674 | 9681 | 89812 | 14047 | 3559 | 25.3364 | |
| anovak-vg | SNP | ti | segdup | * | 97.8325 | 97.8809 | 97.7842 | 91.7442 | 19123 | 414 | 19020 | 431 | 163 | 37.8190 | |
| anovak-vg | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | tech_badpromoters | * | 89.2841 | 83.5294 | 95.8904 | 38.1356 | 71 | 14 | 70 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | * | * | 98.3366 | 98.3717 | 98.3016 | 24.5602 | 953908 | 15790 | 951566 | 16441 | 6526 | 39.6934 | |
| anovak-vg | SNP | tv | HG002complexvar | * | 97.7258 | 97.1262 | 98.3329 | 22.6263 | 239081 | 7074 | 235589 | 3994 | 2964 | 74.2113 | |
| anovak-vg | SNP | tv | HG002compoundhet | * | 74.6577 | 75.2101 | 74.1133 | 50.0629 | 6711 | 2212 | 7063 | 2467 | 1646 | 66.7207 | |
| anovak-vg | SNP | tv | decoy | * | 0.0000 | 0.0000 | 99.9988 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | tv | func_cds | * | 98.2741 | 97.7580 | 98.7957 | 36.4158 | 4273 | 98 | 4266 | 52 | 32 | 61.5385 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.3470 | 92.5462 | 90.1786 | 71.2135 | 1403 | 113 | 1414 | 154 | 61 | 39.6104 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.4923 | 97.2577 | 95.7388 | 64.3143 | 26919 | 759 | 27590 | 1228 | 588 | 47.8827 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 89.3755 | 92.9518 | 86.0642 | 79.3543 | 13544 | 1027 | 13809 | 2236 | 557 | 24.9106 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.0448 | 95.6587 | 96.4340 | 58.7351 | 1278 | 58 | 1271 | 47 | 25 | 53.1915 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5318 | 97.5161 | 97.5474 | 64.9131 | 2120 | 54 | 2108 | 53 | 24 | 45.2830 | |