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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
501-550 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.9087 | 96.8629 | 96.9546 | 55.9921 | 5990 | 194 | 6049 | 190 | 95 | 50.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.3590 | 97.3698 | 97.3483 | 58.9147 | 3776 | 102 | 3818 | 104 | 49 | 47.1154 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.7132 | 76.4249 | 60.7843 | 87.7538 | 295 | 91 | 341 | 220 | 80 | 36.3636 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 78.5739 | 85.5355 | 72.6602 | 82.1649 | 2324 | 393 | 2756 | 1037 | 513 | 49.4696 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 80.3087 | 86.8666 | 74.6716 | 81.1723 | 2057 | 311 | 2444 | 829 | 438 | 52.8347 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.2721 | 93.5191 | 89.1304 | 80.4771 | 10101 | 700 | 10578 | 1290 | 640 | 49.6124 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.4686 | 92.4642 | 88.5573 | 75.8297 | 42258 | 3444 | 42999 | 5556 | 1706 | 30.7055 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.1861 | 94.9340 | 89.5928 | 65.6359 | 9201 | 491 | 9857 | 1145 | 571 | 49.8690 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.5816 | 64.2857 | 69.0476 | 95.7704 | 27 | 15 | 29 | 13 | 8 | 61.5385 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.9194 | 98.3001 | 97.5417 | 56.1712 | 16885 | 292 | 17260 | 435 | 173 | 39.7701 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4963 | 97.0192 | 95.9791 | 41.7450 | 17641 | 542 | 17783 | 745 | 376 | 50.4698 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.2688 | 72.0280 | 54.8387 | 90.2559 | 103 | 40 | 119 | 98 | 35 | 35.7143 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2834 | 97.2128 | 97.3541 | 36.0909 | 7150 | 205 | 7175 | 195 | 109 | 55.8974 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.2222 | 66.6667 | 58.3333 | 94.7368 | 6 | 3 | 7 | 5 | 3 | 60.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | map_l100_m0_e0 | * | 81.2078 | 85.4511 | 77.3660 | 74.7301 | 28063 | 4778 | 27745 | 8117 | 2172 | 26.7587 | |
| anovak-vg | SNP | * | map_l100_m1_e0 | * | 84.0947 | 88.8016 | 79.8617 | 69.2688 | 64295 | 8108 | 63514 | 16016 | 3537 | 22.0842 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | * | 84.2603 | 88.9000 | 80.0809 | 71.0026 | 65754 | 8210 | 64960 | 16158 | 3566 | 22.0696 | |
| anovak-vg | SNP | * | map_l100_m2_e1 | * | 84.3316 | 88.9439 | 80.1741 | 71.0026 | 66474 | 8263 | 65661 | 16237 | 3582 | 22.0607 | |
| anovak-vg | SNP | * | map_l125_m0_e0 | * | 79.0837 | 83.3789 | 75.2094 | 80.8664 | 16163 | 3222 | 15982 | 5268 | 1460 | 27.7145 | |
| anovak-vg | SNP | * | map_l125_m1_e0 | * | 81.0489 | 87.0673 | 75.8087 | 74.5245 | 39465 | 5862 | 39018 | 12451 | 2766 | 22.2151 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | * | 81.2942 | 87.1691 | 76.1613 | 76.0893 | 40728 | 5995 | 40268 | 12604 | 2812 | 22.3104 | |
| anovak-vg | SNP | * | map_l125_m2_e1 | * | 81.3800 | 87.2421 | 76.2560 | 76.1127 | 41180 | 6022 | 40707 | 12675 | 2820 | 22.2485 | |
| anovak-vg | SNP | * | map_l150_m0_e0 | * | 77.8146 | 81.9066 | 74.1121 | 85.6738 | 9855 | 2177 | 9745 | 3404 | 959 | 28.1727 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | * | 79.3251 | 85.8375 | 73.7311 | 78.7422 | 26274 | 4335 | 25974 | 9254 | 2118 | 22.8874 | |
| anovak-vg | SNP | * | map_l150_m2_e0 | * | 79.6445 | 85.9852 | 74.1747 | 80.0306 | 27388 | 4464 | 27076 | 9427 | 2180 | 23.1251 | |
| anovak-vg | SNP | * | map_l150_m2_e1 | * | 79.7323 | 86.0571 | 74.2735 | 80.0613 | 27719 | 4491 | 27398 | 9490 | 2194 | 23.1191 | |
| anovak-vg | SNP | * | map_l250_m0_e0 | * | 72.9992 | 77.5176 | 68.9786 | 95.8110 | 1655 | 480 | 1641 | 738 | 163 | 22.0867 | |
| anovak-vg | SNP | * | map_l250_m1_e0 | * | 74.3435 | 81.2102 | 68.5475 | 91.2491 | 5865 | 1357 | 5819 | 2670 | 600 | 22.4719 | |
| anovak-vg | SNP | * | map_l250_m2_e0 | * | 75.1311 | 81.7121 | 69.5312 | 91.5463 | 6443 | 1442 | 6392 | 2801 | 650 | 23.2060 | |
| anovak-vg | SNP | * | map_l250_m2_e1 | * | 75.2143 | 81.7954 | 69.6133 | 91.5868 | 6533 | 1454 | 6481 | 2829 | 654 | 23.1177 | |
| anovak-vg | SNP | * | map_siren | * | 88.0035 | 90.6441 | 85.5124 | 59.7358 | 132547 | 13681 | 130863 | 22171 | 5290 | 23.8600 | |
| anovak-vg | SNP | * | segdup | * | 97.8173 | 97.8231 | 97.8116 | 92.2860 | 27456 | 611 | 27219 | 609 | 236 | 38.7521 | |
| anovak-vg | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | tech_badpromoters | * | 89.4635 | 84.0764 | 95.5882 | 39.8230 | 132 | 25 | 130 | 6 | 6 | 100.0000 | |
| anovak-vg | SNP | ti | * | * | 98.4812 | 98.2960 | 98.6672 | 19.8346 | 2049980 | 35538 | 2043729 | 27607 | 12786 | 46.3143 | |
| anovak-vg | SNP | ti | HG002complexvar | * | 97.6154 | 96.7854 | 98.4597 | 17.8294 | 492093 | 16344 | 484655 | 7582 | 6075 | 80.1240 | |
| anovak-vg | SNP | ti | HG002compoundhet | * | 77.8164 | 75.3290 | 80.4737 | 38.3806 | 13166 | 4312 | 13522 | 3281 | 2578 | 78.5736 | |
| anovak-vg | SNP | ti | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9986 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | func_cds | * | 98.6277 | 98.0852 | 99.1763 | 27.7317 | 13523 | 264 | 13486 | 112 | 79 | 70.5357 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.3819 | 93.7500 | 91.0531 | 69.7462 | 3045 | 203 | 3104 | 305 | 131 | 42.9508 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.7089 | 96.7345 | 94.7048 | 54.9593 | 27046 | 913 | 27829 | 1556 | 769 | 49.4216 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9171 | 92.2101 | 89.6598 | 73.7675 | 28717 | 2426 | 29308 | 3380 | 1164 | 34.4379 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.5233 | 95.1335 | 95.9163 | 58.0490 | 2815 | 144 | 2842 | 121 | 62 | 51.2397 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||