PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1-50 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | * | * | 70.4960 | 69.7491 | 71.2591 | 54.1876 | 240315 | 104227 | 248606 | 100270 | 81436 | 81.2167 | |
| anovak-vg | INDEL | * | HG002complexvar | * | 72.8155 | 71.0364 | 74.6860 | 53.4026 | 54654 | 22284 | 56069 | 19004 | 16560 | 87.1395 | |
| anovak-vg | INDEL | * | HG002compoundhet | * | 36.9041 | 30.6776 | 46.3018 | 57.6241 | 9191 | 20769 | 15813 | 18339 | 13521 | 73.7281 | |
| anovak-vg | INDEL | * | decoy | * | 67.7419 | 60.0000 | 77.7778 | 99.9553 | 6 | 4 | 7 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | func_cds | * | 81.4334 | 80.2247 | 82.6790 | 38.5816 | 357 | 88 | 358 | 75 | 54 | 72.0000 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.8320 | 33.8727 | 48.3358 | 55.3849 | 3412 | 6661 | 4197 | 4486 | 3438 | 76.6384 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.4951 | 11 | 9 | 8 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 72.8701 | 70.9790 | 74.8646 | 68.2103 | 67039 | 27410 | 79629 | 26735 | 20426 | 76.4017 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.0405 | 54.1246 | 62.5672 | 55.8642 | 35371 | 29980 | 43558 | 26060 | 19700 | 75.5948 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 63.6599 | 61.2245 | 66.2970 | 66.6238 | 1320 | 836 | 1375 | 699 | 438 | 62.6609 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3898 | 52.9412 | 53.8462 | 99.5165 | 9 | 8 | 7 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 73.8753 | 73.0416 | 74.7283 | 69.3443 | 3739 | 1380 | 3850 | 1302 | 863 | 66.2826 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 77.9189 | 77.3944 | 78.4506 | 71.4753 | 2804 | 819 | 2876 | 790 | 545 | 68.9873 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.6989 | 27.4371 | 43.6639 | 50.1227 | 1669 | 4414 | 2219 | 2863 | 2250 | 78.5889 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.8095 | 2 | 1 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 51.7221 | 46.8234 | 57.7656 | 39.6200 | 17747 | 20155 | 24726 | 18078 | 14175 | 78.4102 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 54.6126 | 50.3907 | 59.6067 | 38.4218 | 16121 | 15871 | 22551 | 15282 | 11968 | 78.3144 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 54.3121 | 49.8996 | 59.5807 | 47.5940 | 21624 | 21711 | 28700 | 19470 | 15099 | 77.5501 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.0405 | 54.1246 | 62.5672 | 55.8642 | 35371 | 29980 | 43558 | 26060 | 19700 | 75.5948 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 63.5093 | 59.8218 | 67.6813 | 39.7409 | 21890 | 14702 | 30217 | 14429 | 11301 | 78.3214 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.1772 | 16.4208 | 39.3809 | 42.5111 | 345 | 1756 | 458 | 705 | 585 | 82.9787 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.9743 | 92.1019 | 91.8470 | 57.2556 | 26028 | 2232 | 27420 | 2434 | 1757 | 72.1857 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 51.7766 | 41.1290 | 69.8630 | 99.9464 | 51 | 73 | 51 | 22 | 18 | 81.8182 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 68.5075 | 66.4183 | 70.7325 | 47.6018 | 13192 | 6670 | 15431 | 6385 | 4862 | 76.1472 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 30.1806 | 24.9718 | 38.1353 | 46.7618 | 663 | 1992 | 953 | 1546 | 1250 | 80.8538 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6300 | 71.4689 | 73.8294 | 38.5577 | 4812 | 1921 | 5913 | 2096 | 1645 | 78.4828 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 26.7404 | 22.0721 | 33.9130 | 42.0655 | 49 | 173 | 78 | 152 | 131 | 86.1842 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | map_l100_m0_e0 | * | 72.6539 | 73.0006 | 72.3105 | 87.1262 | 1141 | 422 | 1183 | 453 | 264 | 58.2781 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | * | 72.2354 | 72.6157 | 71.8590 | 84.0163 | 2604 | 982 | 2671 | 1046 | 628 | 60.0382 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | * | 72.4393 | 72.7593 | 72.1222 | 84.8313 | 2687 | 1006 | 2763 | 1068 | 640 | 59.9251 | |
| anovak-vg | INDEL | * | map_l100_m2_e1 | * | 72.2208 | 72.4441 | 71.9990 | 84.9008 | 2721 | 1035 | 2795 | 1087 | 655 | 60.2576 | |
| anovak-vg | INDEL | * | map_l125_m0_e0 | * | 71.3287 | 72.2222 | 70.4570 | 90.6359 | 637 | 245 | 663 | 278 | 156 | 56.1151 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | * | 72.5033 | 74.1813 | 70.8995 | 87.0946 | 1563 | 544 | 1608 | 660 | 372 | 56.3636 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | * | 72.8494 | 74.4991 | 71.2712 | 87.8407 | 1636 | 560 | 1682 | 678 | 383 | 56.4897 | |
| anovak-vg | INDEL | * | map_l125_m2_e1 | * | 72.6951 | 74.3371 | 71.1241 | 87.8885 | 1654 | 571 | 1702 | 691 | 393 | 56.8741 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | * | 70.9648 | 71.4008 | 70.5341 | 93.5272 | 367 | 147 | 383 | 160 | 88 | 55.0000 | |
| anovak-vg | INDEL | * | map_l150_m1_e0 | * | 72.5622 | 74.5142 | 70.7099 | 89.9578 | 997 | 341 | 1026 | 425 | 224 | 52.7059 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | * | 72.9602 | 74.8580 | 71.1564 | 90.5195 | 1054 | 354 | 1083 | 439 | 234 | 53.3030 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | * | 72.7945 | 74.6352 | 71.0425 | 90.5099 | 1074 | 365 | 1104 | 450 | 242 | 53.7778 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | * | 64.4116 | 67.9487 | 61.2245 | 98.1965 | 53 | 25 | 60 | 38 | 20 | 52.6316 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | * | 66.8127 | 69.1803 | 64.6018 | 96.2450 | 211 | 94 | 219 | 120 | 61 | 50.8333 | |
| anovak-vg | INDEL | * | map_l250_m2_e0 | * | 67.7533 | 69.7885 | 65.8333 | 96.4399 | 231 | 100 | 237 | 123 | 63 | 51.2195 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | * | 67.7462 | 69.9700 | 65.6593 | 96.4861 | 233 | 100 | 239 | 125 | 63 | 50.4000 | |
| anovak-vg | INDEL | * | map_siren | * | 72.9885 | 73.1309 | 72.8467 | 79.6324 | 5419 | 1991 | 5489 | 2046 | 1378 | 67.3509 | |
| anovak-vg | INDEL | * | segdup | * | 73.2929 | 72.4961 | 74.1075 | 94.2874 | 1853 | 703 | 1889 | 660 | 536 | 81.2121 | |
| anovak-vg | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | * | tech_badpromoters | * | 66.4036 | 56.5789 | 80.3571 | 44.5545 | 43 | 33 | 45 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 20.0000 | 90.1961 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |