PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
401-450 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | * | het | 92.8434 | 92.0858 | 93.6136 | 55.1298 | 178769 | 15364 | 200114 | 13652 | 5023 | 36.7931 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 43.5285 | 42.1324 | 45.0202 | 75.7921 | 4244 | 5829 | 4231 | 5167 | 5021 | 97.1744 | |
| mlin-fermikit | SNP | * | HG002complexvar | * | 98.2239 | 97.1863 | 99.2840 | 18.6883 | 733159 | 21226 | 733074 | 5287 | 5014 | 94.8364 | |
| ciseli-custom | INDEL | D1_5 | HG002compoundhet | homalt | 8.4350 | 85.5670 | 4.4361 | 66.5215 | 249 | 42 | 249 | 5364 | 5004 | 93.2886 | |
| mlin-fermikit | SNP | * | HG002complexvar | homalt | 98.3225 | 98.4247 | 98.2205 | 20.7847 | 284029 | 4546 | 284043 | 5146 | 4990 | 96.9685 | |
| anovak-vg | SNP | * | map_siren | het | 84.8820 | 91.5981 | 79.0836 | 63.1144 | 83346 | 7645 | 82394 | 21792 | 4974 | 22.8249 | |
| eyeh-varpipe | INDEL | I1_5 | * | * | 94.9923 | 93.5665 | 96.4622 | 53.4954 | 140971 | 9693 | 141103 | 5175 | 4944 | 95.5362 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 48.6764 | 39.2603 | 64.0343 | 80.0683 | 25657 | 39694 | 30253 | 16992 | 4936 | 29.0490 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 48.6764 | 39.2603 | 64.0343 | 80.0683 | 25657 | 39694 | 30253 | 16992 | 4936 | 29.0490 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.5469 | 76.4799 | 68.9986 | 69.9494 | 23308 | 7168 | 24351 | 10941 | 4932 | 45.0781 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 72.5469 | 76.4799 | 68.9986 | 69.9494 | 23308 | 7168 | 24351 | 10941 | 4932 | 45.0781 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 56.3707 | 87.9455 | 41.4787 | 65.8135 | 3553 | 487 | 3568 | 5034 | 4915 | 97.6361 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.7027 | 35.8682 | 42.0236 | 64.3849 | 3613 | 6460 | 3601 | 4968 | 4896 | 98.5507 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 68.0107 | 68.2833 | 67.7403 | 40.7190 | 3914 | 1818 | 10936 | 5208 | 4870 | 93.5100 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 68.5075 | 66.4183 | 70.7325 | 47.6018 | 13192 | 6670 | 15431 | 6385 | 4862 | 76.1472 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 86.2517 | 96.2231 | 78.1528 | 59.6097 | 17146 | 673 | 18083 | 5055 | 4861 | 96.1622 | |
| ciseli-custom | INDEL | D6_15 | * | homalt | 66.6499 | 91.7325 | 52.3387 | 51.6724 | 5803 | 523 | 5785 | 5268 | 4853 | 92.1222 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.9422 | 91.6371 | 84.5336 | 63.1509 | 27931 | 2549 | 27596 | 5049 | 4851 | 96.0784 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.9422 | 91.6371 | 84.5336 | 63.1509 | 27931 | 2549 | 27596 | 5049 | 4851 | 96.0784 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 75.4653 | 90.5356 | 64.6962 | 41.2162 | 1234 | 129 | 9456 | 5160 | 4823 | 93.4690 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 42.4373 | 41.1000 | 43.8645 | 68.7909 | 4140 | 5933 | 4118 | 5270 | 4818 | 91.4231 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 54.1148 | 85.3960 | 39.6066 | 69.0608 | 3450 | 590 | 3443 | 5250 | 4800 | 91.4286 | |
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | * | 2.5796 | 2.0283 | 3.5425 | 37.8475 | 178 | 8598 | 179 | 4874 | 4796 | 98.3997 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.6437 | 72.3762 | 37.7781 | 62.4735 | 2924 | 1116 | 2938 | 4839 | 4790 | 98.9874 | |
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | het | 6.3867 | 74.0385 | 3.3373 | 37.4814 | 154 | 54 | 168 | 4866 | 4788 | 98.3970 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.4168 | 96.1004 | 75.2662 | 52.8425 | 14047 | 570 | 14984 | 4924 | 4785 | 97.1771 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | * | 44.4193 | 40.7689 | 48.7878 | 63.5182 | 5037 | 7318 | 5393 | 5661 | 4783 | 84.4904 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 59.0651 | 56.3393 | 62.0679 | 49.1269 | 10287 | 7972 | 10307 | 6299 | 4780 | 75.8851 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | het | 60.6574 | 83.0588 | 47.7728 | 63.6646 | 706 | 144 | 5148 | 5628 | 4753 | 84.4527 | |
| eyeh-varpipe | INDEL | D1_5 | * | * | 95.6258 | 94.7617 | 96.5059 | 56.5047 | 139058 | 7687 | 139038 | 5034 | 4747 | 94.2988 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 55.1228 | 49.5784 | 62.0635 | 51.0444 | 8761 | 8910 | 8975 | 5486 | 4728 | 86.1830 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 55.1228 | 49.5784 | 62.0635 | 51.0444 | 8761 | 8910 | 8975 | 5486 | 4728 | 86.1830 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.1721 | 98.0713 | 90.5711 | 70.5632 | 47340 | 931 | 48307 | 5029 | 4714 | 93.7363 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 67.5308 | 74.8546 | 61.5124 | 50.8317 | 4376 | 1470 | 8728 | 5461 | 4703 | 86.1198 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 67.5308 | 74.8546 | 61.5124 | 50.8317 | 4376 | 1470 | 8728 | 5461 | 4703 | 86.1198 | |
| anovak-vg | SNP | ti | HG002complexvar | het | 97.2372 | 96.4650 | 98.0220 | 17.7484 | 303639 | 11127 | 299610 | 6046 | 4694 | 77.6381 | |
| gduggal-bwafb | INDEL | * | * | * | 96.9474 | 95.5004 | 98.4390 | 56.3888 | 329039 | 15503 | 342492 | 5431 | 4691 | 86.3745 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 38.9448 | 36.3079 | 41.9946 | 48.7568 | 3434 | 6024 | 3436 | 4746 | 4690 | 98.8201 | |
| anovak-vg | INDEL | I6_15 | * | homalt | 61.4755 | 80.7661 | 49.6232 | 33.6435 | 5039 | 1200 | 5202 | 5281 | 4685 | 88.7143 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 36.9719 | 33.9924 | 40.5239 | 46.0310 | 3215 | 6243 | 3218 | 4723 | 4680 | 99.0896 | |
| eyeh-varpipe | INDEL | D6_15 | * | * | 75.4633 | 71.7500 | 79.5820 | 47.2482 | 18721 | 7371 | 18658 | 4787 | 4643 | 96.9919 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.4050 | 68.7947 | 74.2213 | 55.0266 | 13664 | 6198 | 13653 | 4742 | 4639 | 97.8279 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.9195 | 72.9786 | 74.8850 | 67.4004 | 14495 | 5367 | 14485 | 4858 | 4633 | 95.3685 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 86.7164 | 95.8976 | 79.1397 | 59.1322 | 17088 | 731 | 18434 | 4859 | 4632 | 95.3283 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 69.0612 | 65.8068 | 72.6543 | 37.5809 | 16149 | 8391 | 16741 | 6301 | 4632 | 73.5121 | |
| gduggal-snapplat | INDEL | D1_5 | * | * | 84.8354 | 80.9636 | 89.0961 | 66.8161 | 118810 | 27935 | 139871 | 17118 | 4621 | 26.9950 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.3186 | 75.9474 | 67.2215 | 47.6957 | 9018 | 2856 | 12237 | 5967 | 4608 | 77.2247 | |
| ckim-isaac | INDEL | * | * | * | 95.8099 | 93.7006 | 98.0163 | 48.2658 | 322838 | 21704 | 321857 | 6514 | 4603 | 70.6632 | |