PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4301-4350 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | * | 96.4757 | 97.4377 | 95.5326 | 75.4346 | 72822 | 1915 | 71809 | 3358 | 246 | 7.3258 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.3517 | 52.2843 | 40.0424 | 58.1189 | 103 | 94 | 189 | 283 | 245 | 86.5724 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | homalt | 95.9196 | 95.4992 | 96.3438 | 51.1776 | 10121 | 477 | 10066 | 382 | 245 | 64.1361 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1147 | 97.5960 | 92.7564 | 74.4795 | 9459 | 233 | 9540 | 745 | 245 | 32.8859 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | het | 96.7434 | 96.4676 | 97.0208 | 79.0695 | 28593 | 1047 | 28593 | 878 | 245 | 27.9043 | |
| jmaeng-gatk | INDEL | I1_5 | * | homalt | 99.7149 | 99.8444 | 99.5857 | 55.4032 | 60334 | 94 | 60340 | 251 | 245 | 97.6096 | |
| cchapple-custom | SNP | * | map_l150_m2_e0 | het | 95.7599 | 96.9701 | 94.5794 | 81.9061 | 19523 | 610 | 19542 | 1120 | 245 | 21.8750 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 69.4206 | 72.4582 | 66.6275 | 85.4704 | 563 | 214 | 567 | 284 | 245 | 86.2676 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.6339 | 99.5071 | 95.8298 | 51.0822 | 5653 | 28 | 5653 | 246 | 245 | 99.5935 | |
| jli-custom | INDEL | * | HG002compoundhet | het | 95.0677 | 97.0689 | 93.1473 | 77.2493 | 3974 | 120 | 3738 | 275 | 245 | 89.0909 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 84.9493 | 79.0158 | 91.8463 | 60.4412 | 3950 | 1049 | 3920 | 348 | 245 | 70.4023 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 84.9493 | 79.0158 | 91.8463 | 60.4412 | 3950 | 1049 | 3920 | 348 | 245 | 70.4023 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 78.5716 | 74.3137 | 83.3471 | 67.6060 | 1137 | 393 | 2012 | 402 | 245 | 60.9453 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 78.5716 | 74.3137 | 83.3471 | 67.6060 | 1137 | 393 | 2012 | 402 | 245 | 60.9453 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | het | 88.3933 | 80.7745 | 97.5991 | 81.8251 | 12453 | 2964 | 12439 | 306 | 244 | 79.7386 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | het | 88.5810 | 81.1371 | 97.5288 | 82.6321 | 12801 | 2976 | 12787 | 324 | 244 | 75.3086 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | het | 88.6428 | 81.2273 | 97.5483 | 82.6203 | 12946 | 2992 | 12931 | 325 | 244 | 75.0769 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | het | 96.7249 | 96.4527 | 96.9986 | 79.0213 | 28278 | 1040 | 28278 | 875 | 244 | 27.8857 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.6843 | 72.0726 | 91.6333 | 55.4102 | 1311 | 508 | 2749 | 251 | 244 | 97.2112 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.9828 | 69.1181 | 97.7650 | 72.5426 | 12556 | 5610 | 12554 | 287 | 244 | 85.0174 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.9828 | 69.1181 | 97.7650 | 72.5426 | 12556 | 5610 | 12554 | 287 | 244 | 85.0174 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | het | 87.0129 | 80.9433 | 94.0664 | 49.5246 | 2557 | 602 | 3995 | 252 | 244 | 96.8254 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 80.6843 | 72.0726 | 91.6333 | 55.4102 | 1311 | 508 | 2749 | 251 | 244 | 97.2112 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.2926 | 96.8040 | 95.7866 | 41.7994 | 10389 | 343 | 10503 | 462 | 244 | 52.8139 | |
| asubramanian-gatk | INDEL | * | HG002complexvar | * | 98.8559 | 98.4299 | 99.2857 | 62.5855 | 75730 | 1208 | 75611 | 544 | 244 | 44.8529 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 89.5433 | 87.3487 | 91.8510 | 85.8019 | 27203 | 3940 | 27288 | 2421 | 244 | 10.0785 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 89.5433 | 87.3487 | 91.8510 | 85.8019 | 27203 | 3940 | 27288 | 2421 | 244 | 10.0785 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.1034 | 98.6295 | 99.5819 | 70.6519 | 63548 | 883 | 64304 | 270 | 244 | 90.3704 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4266 | 99.5114 | 95.4273 | 42.4504 | 5092 | 25 | 5092 | 244 | 244 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 51.6345 | 52.3810 | 50.9091 | 64.2857 | 330 | 300 | 336 | 324 | 243 | 75.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6266 | 99.2892 | 97.9729 | 65.4849 | 12432 | 89 | 12276 | 254 | 243 | 95.6693 | |
| qzeng-custom | SNP | tv | HG002complexvar | * | 99.0948 | 98.4189 | 99.7800 | 23.2771 | 242263 | 3892 | 238613 | 526 | 243 | 46.1977 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | * | 83.1087 | 72.8830 | 96.6721 | 87.1352 | 8383 | 3119 | 8366 | 288 | 243 | 84.3750 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.0791 | 96.2623 | 97.9098 | 62.3765 | 12053 | 468 | 11898 | 254 | 243 | 95.6693 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 79.7708 | 76.3365 | 83.5286 | 61.7313 | 871 | 270 | 2282 | 450 | 243 | 54.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 81.5781 | 69.6835 | 98.3690 | 63.8094 | 15260 | 6639 | 15259 | 253 | 243 | 96.0474 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | het | 84.6320 | 90.1536 | 79.7478 | 64.8768 | 998 | 109 | 1012 | 257 | 243 | 94.5525 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.7327 | 97.7687 | 79.5653 | 85.1430 | 10560 | 241 | 10653 | 2736 | 243 | 8.8816 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | het | 89.3607 | 98.0237 | 82.1046 | 85.3259 | 2232 | 45 | 2606 | 568 | 243 | 42.7817 | |
| ghariani-varprowl | INDEL | D6_15 | * | homalt | 74.2367 | 61.6503 | 93.2807 | 52.1893 | 3900 | 2426 | 3901 | 281 | 242 | 86.1210 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9932 | 96.6906 | 97.2976 | 45.4909 | 9145 | 313 | 9145 | 254 | 242 | 95.2756 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | * | 72.7945 | 74.6352 | 71.0425 | 90.5099 | 1074 | 365 | 1104 | 450 | 242 | 53.7778 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | homalt | 72.9700 | 99.6960 | 57.5439 | 88.3697 | 328 | 1 | 328 | 242 | 242 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | het | 96.6905 | 96.3687 | 97.0145 | 77.6907 | 27361 | 1031 | 27361 | 842 | 242 | 28.7411 | |
| jpowers-varprowl | INDEL | D6_15 | * | homalt | 74.3238 | 61.6345 | 93.5925 | 52.0152 | 3899 | 2427 | 3900 | 267 | 242 | 90.6367 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | * | 96.4651 | 97.4352 | 95.5142 | 75.4124 | 72067 | 1897 | 71074 | 3338 | 242 | 7.2499 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 68.5238 | 70.7333 | 66.4482 | 68.8856 | 2122 | 878 | 2230 | 1126 | 242 | 21.4920 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 90.8156 | 88.7866 | 92.9396 | 44.8670 | 5978 | 755 | 6279 | 477 | 242 | 50.7338 | |