PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 841 842 843 844 845 846 847 848 849 ... 1720 1721 » 42201-42250 / 86044 show all
gduggal-bwafb	INDEL	D1_5	map_l250_m1_e0	homalt	100.0000	100.0000	100.0000	95.4726	57	0	57	0	0
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e0	*	97.8142	97.2826	98.3516	95.3737	179	5	179	3	0	0.0000
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e0	het	97.0954	96.6942	97.5000	95.0556	117	4	117	3	0	0.0000
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e0	hetalt	80.0000	66.6667	100.0000	97.7273	2	1	2	0	0
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e0	homalt	100.0000	100.0000	100.0000	95.7717	60	0	60	0	0
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e1	*	97.8261	97.2973	98.3607	95.4602	180	5	180	3	0	0.0000
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e1	het	97.1193	96.7213	97.5207	95.1210	118	4	118	3	0	0.0000
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e1	hetalt	80.0000	66.6667	100.0000	97.8022	2	1	2	0	0
gduggal-bwafb	INDEL	D1_5	map_l250_m2_e1	homalt	100.0000	100.0000	100.0000	95.8904	60	0	60	0	0
gduggal-bwafb	INDEL	D1_5	segdup	het	98.9321	98.5549	99.3122	94.6465	682	10	722	5	0	0.0000
gduggal-bwafb	INDEL	D1_5	segdup	homalt	99.7207	99.4429	100.0000	94.9012	357	2	356	0	0
gduggal-bwafb	INDEL	D1_5	segdupwithalt	*	100.0000	100.0000	100.0000	99.9942	1	0	1	0	0
gduggal-bwafb	INDEL	D1_5	segdupwithalt	het	100.0000	100.0000	100.0000	99.9910	1	0	1	0	0
gduggal-bwafb	INDEL	D1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	40.6250	19	0	19	0	0
gduggal-bwafb	INDEL	D1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	41.1765	8	0	10	0	0
gduggal-bwafb	INDEL	D1_5	tech_badpromoters	hetalt	0.0000	100.0000	0.0000	0.0000	2	0	0	0	0
gduggal-bwafb	INDEL	D1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	40.0000	9	0	9	0	0
gduggal-bwafb	INDEL	D6_15	decoy	*	100.0000	100.0000	100.0000	99.9165	1	0	1	0	0
gduggal-bwafb	INDEL	D6_15	decoy	het	0.0000	0.0000	100.0000	99.8913	0	0	1	0	0
gduggal-bwafb	INDEL	D6_15	decoy	hetalt		100.0000		100.0000	1	0	0	0	0
gduggal-bwafb	INDEL	D6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D6_15	func_cds	hetalt	0.0000	50.0000	0.0000	0.0000	1	1	0	0	0
gduggal-bwafb	INDEL	D6_15	func_cds	homalt	90.9091	83.3333	100.0000	61.5385	10	2	10	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.7444	3	0	3	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	98.4000	2	0	2	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	88.8889	80.0000	100.0000	74.6479	44	11	18	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	90.0000	81.8182	100.0000	69.2308	27	6	12	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	66.6667	50.0000	100.0000	88.8889	1	1	1	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	87.5000	1	0	1	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	1	0	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	74.2610	59.0596	100.0000	28.0702	515	357	123	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	80.0000	66.6667	100.0000	99.6219	6	3	2	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwafb	INDEL	D6_15	map_l100_m0_e0	het	92.7976	90.0000	95.7746	84.8614	54	6	68	3	0	0.0000
gduggal-bwafb	INDEL	D6_15	map_l100_m0_e0	hetalt	84.8485	73.6842	100.0000	82.6087	14	5	4	0	0
gduggal-bwafb	INDEL	D6_15	map_l125_m0_e0	het	93.2102	89.6552	97.0588	89.8204	26	3	33	1	0	0.0000
gduggal-bwafb	INDEL	D6_15	map_l125_m0_e0	hetalt		83.3333		100.0000	5	1	0	0	0
gduggal-bwafb	INDEL	D6_15	map_l125_m1_e0	het	94.7694	92.1875	97.5000	85.8156	59	5	78	2	0	0.0000
gduggal-bwafb	INDEL	D6_15	map_l125_m1_e0	hetalt	94.4444	89.4737	100.0000	90.6250	17	2	3	0	0
gduggal-bwafb	INDEL	D6_15	map_l125_m2_e0	het	94.5127	91.5493	97.6744	86.4139	65	6	84	2	0	0.0000
gduggal-bwafb	INDEL	D6_15	map_l125_m2_e0	hetalt	94.4444	89.4737	100.0000	91.4286	17	2	3	0	0
gduggal-bwafb	INDEL	D6_15	map_l125_m2_e1	het	94.5127	91.5493	97.6744	86.6460	65	6	84	2	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge