PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41301-41350 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.4406 | 92.0792 | 99.0566 | 93.2954 | 93 | 8 | 105 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5236 | 90.9091 | 98.4375 | 94.3662 | 60 | 6 | 63 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0588 | 94.2857 | 100.0000 | 90.5618 | 33 | 2 | 42 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 91.9192 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5926 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5455 | 14 | 0 | 14 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0331 | 29 | 0 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 30 | 0 | 30 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.3723 | 31 | 0 | 31 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3953 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.1461 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.1461 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 97.0060 | 98.7805 | 95.2941 | 94.2138 | 81 | 1 | 81 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 95.8333 | 100.0000 | 92.0000 | 95.3747 | 46 | 0 | 46 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7928 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.2527 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 96.5116 | 97.6471 | 95.4023 | 94.2039 | 83 | 2 | 83 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 95.9184 | 100.0000 | 92.1569 | 95.3888 | 47 | 0 | 47 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.9825 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 98.3452 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 98.4026 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4684 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 97.2973 | 100.0000 | 94.7368 | 97.5765 | 18 | 0 | 18 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 97.9346 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5035 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 97.7778 | 100.0000 | 95.6522 | 97.4558 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 96.5517 | 100.0000 | 93.3333 | 97.7511 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3190 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 97.7778 | 100.0000 | 95.6522 | 97.5242 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |