PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40401-40450 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 94.8454 | 0.0000 | 0.0000 | 92 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 84.2105 | 0.0000 | 0.0000 | 16 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 82.3529 | 0.0000 | 0.0000 | 56 | 12 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 82.3529 | 0.0000 | 0.0000 | 56 | 12 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 80.8219 | 0.0000 | 0.0000 | 59 | 14 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 95.7044 | 96.5517 | 94.8718 | 91.7021 | 28 | 1 | 37 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 5 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 85.0000 | 0.0000 | 0.0000 | 17 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 96.5517 | 100.0000 | 93.3333 | 92.1875 | 20 | 0 | 28 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 77.7778 | 0.0000 | 0.0000 | 7 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.2112 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.3545 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 95.0000 | 100.0000 | 90.4762 | 95.4936 | 18 | 0 | 19 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.7560 | 11 | 0 | 14 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.3820 | 5 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 95.8333 | 100.0000 | 92.0000 | 95.3532 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 94.4444 | 100.0000 | 89.4737 | 95.6221 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 95.8333 | 100.0000 | 92.0000 | 95.4710 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 94.4444 | 100.0000 | 89.4737 | 95.7207 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 86.8687 | 0.0000 | 0.0000 | 86 | 13 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | het | 98.3425 | 96.7391 | 100.0000 | 93.1979 | 89 | 3 | 144 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.7778 | 17 | 0 | 17 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 10 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | * | hetalt | 0.0000 | 92.6120 | 0.0000 | 0.0000 | 1943 | 155 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 91.9403 | 0.0000 | 0.0000 | 308 | 27 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 92.6421 | 0.0000 | 0.0000 | 1939 | 154 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||