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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
3951-4000 / 86044 show all
eyeh-varpipeINDEL*HG002complexvarhetalt
61.1209
45.5799
92.7426
76.1697
168620133642285277
97.1930
ckim-vqsrINDELI6_15*homalt
97.7408
99.8557
95.7136
54.8957
623096230279277
99.2832
ghariani-varprowlSNPti*het
99.3626
99.8721
98.8582
25.2183
12802371639128041714789277
1.8730
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
52.8485
46.3538
61.4597
79.2031
2657307527621732277
15.9931
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9694
99.9307
96.0837
66.5958
10090710108412277
67.2330
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8814
97.0742
98.7022
53.8225
2159965121600284276
97.1831
egarrison-hhgaINDELD6_15HG002complexvar*
89.5440
86.4579
92.8586
57.3769
45847184590353276
78.1870
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
44.5283
92.9134
29.2804
23.5294
1189118285276
96.8421
gduggal-bwavardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
43.5803
37.0727
52.8590
78.7470
423718416371276
74.3935
gduggal-bwaplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.8912
73.6757
97.3956
82.4238
355641270735564951276
29.0221
cchapple-customSNPtimap_l100_m2_e1*
97.7339
97.6781
97.7898
68.9863
483361149483161092276
25.2747
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
54.8008
64.3595
47.7143
68.5676
623345668732276
37.7049
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.9231
98.9002
80.7746
59.1871
1169131168278276
99.2806
gduggal-snapvardSNP*map_l100_m0_e0*
92.6283
96.0476
89.4441
77.2407
315431298311483676276
7.5082
ghariani-varprowlINDELD16_PLUSHG002complexvar*
77.2722
74.0718
80.7617
66.1856
12174261230293276
94.1980
gduggal-snapplatSNPtvmap_l100_m0_e0*
92.3781
89.7690
95.1434
82.0623
995011349952508276
54.3307
ghariani-varprowlSNP*map_l125_m2_e1*
97.9668
98.7606
97.1856
77.0392
46617585466171350276
20.4444
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
96.7018
96.4052
97.0003
44.3991
91183409119282276
97.8723
rpoplin-dv42SNPti**
99.9621
99.9459
99.9782
17.6958
208438311282084320454276
60.7930
rpoplin-dv42INDELD16_PLUS*het
94.0655
97.4042
90.9480
71.1818
3077822974296276
93.2432
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.1124
96.0968
84.8297
79.1299
1748711644294276
93.8776
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.1124
96.0968
84.8297
79.1299
1748711644294276
93.8776
qzeng-customSNPtvmap_l125_m2_e1*
85.1190
75.5598
97.4472
83.5794
12586407112559329276
83.8906
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
57.8720
92.5676
42.0945
50.6085
13711205282275
97.5177
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.0471
96.0902
74.6866
62.8554
1278522800949275
28.9779
eyeh-varpipeINDELI6_15HG002complexvarhomalt
78.9714
80.2306
77.7510
38.7303
974240968277275
99.2780
gduggal-bwafbINDEL**hetalt
87.6150
80.5643
96.0183
78.7583
2033249056728279275
98.5663
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
86.1916
81.4378
91.5347
58.1069
29006613006278275
98.9209
cchapple-customSNPtimap_l100_m2_e0*
97.7249
97.6634
97.7865
68.9717
478171144478001082275
25.4159
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
ghariani-varprowlSNP*map_l125_m2_e0*
97.9545
98.7522
97.1696
76.9826
46140583461401344275
20.4613
gduggal-snapplatSNPtvHG002compoundhet*
81.2573
87.2016
76.0717
63.0432
7781114278082456275
11.1971
gduggal-snapfbSNP*HG002compoundhethomalt
96.1466
99.1282
93.3392
44.8696
106889410692763275
36.0419
qzeng-customSNPtvmap_l125_m2_e0*
85.0368
75.4382
97.4343
83.5735
12439405012418327274
83.7920
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
94.3116
95.7208
92.9434
47.3511
80083588008608274
45.0658
astatham-gatkINDELI6_15HG002compoundhethomalt
18.3976
100.0000
10.1307
62.6829
31031275274
99.6364
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.9723
97.9176
88.5025
64.8041
2163462163281274
97.5089
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
46.0787
30.3663
95.4861
59.9469
426197716050286274
95.8042
cchapple-customSNPtiHG002complexvar*
99.8096
99.6932
99.9263
17.3694
5068761560505502373274
73.4584
cchapple-customSNPtimap_l100_m2_e1het
97.1612
97.8036
96.5271
73.0715
30280680302961090274
25.1376
gduggal-bwavardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.0275
82.7982
49.5879
79.0744
36175361367274
74.6594
gduggal-bwaplatINDELD6_15**
86.9684
78.1121
98.0899
65.2244
20381571120387397273
68.7657
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.7617
96.8094
92.7988
67.6203
36411203634282273
96.8085
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.7617
96.8094
92.7988
67.6203
36411203634282273
96.8085
mlin-fermikitINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.4923
90.0065
83.2423
70.9011
13871541371276273
98.9130
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
96.8049
97.4163
96.2011
51.9614
1082128718967749273
36.4486
mlin-fermikitINDEL*map_l100_m2_e1*
75.3445
66.1342
87.5352
80.6829
248412722486354273
77.1186
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2241
98.9337
99.5161
74.5848
6374468763757310273
88.0645
jpowers-varprowlINDELD16_PLUSHG002complexvar*
75.6960
71.3329
80.6276
65.0203
11724711182284273
96.1268