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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
351-400 / 86044 show all
mlin-fermikitSNP*map_siren*
83.3638
74.6157
94.4357
47.0930
1091093711910909464285503
85.6098
gduggal-bwavardINDEL*HG002complexvarhet
91.7227
97.3578
86.7042
60.1106
4499112214467068505497
80.2482
mlin-fermikitSNP*map_sirenhomalt
84.4526
80.6077
88.6825
45.6664
44460106964445356735485
96.6861
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
56.8616
54.1076
59.9109
50.1524
1114494521116874735485
73.3976
ghariani-varprowlINDELD1_5HG002compoundhethet
36.0201
91.2037
22.4416
71.2332
1576152161455785463
97.9383
gduggal-bwavardINDELD6_15HG002compoundhet*
10.9462
9.3899
13.1210
37.7051
848818383255095456
99.0379
gduggal-bwavardINDELI1_5HG002compoundhet*
10.9209
8.5626
15.0721
67.7671
10581129898355395452
98.4293
gduggal-bwavardINDELI1_5HG002compoundhethet
20.0258
84.8235
11.3531
68.3156
72112970955365451
98.4646
gduggal-bwavardINDELD6_15HG002compoundhethet
22.7477
94.6262
12.9278
37.5915
8104681654965446
99.0902
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.6104
96.3123
83.7805
65.9807
2935611243041458885443
92.4423
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.6104
96.3123
83.7805
65.9807
2935611243041458885443
92.4423
ndellapenna-hhgaINDEL**het
97.8590
98.8060
96.9301
56.3967
191815231819332861235425
88.6004
ciseli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
83.2820
90.9950
76.7743
72.8145
1992719721980759925413
90.3371
gduggal-snapplatINDEL*HG002compoundhet*
42.2745
36.5854
50.0587
72.5688
109611899911522114955404
47.0117
ghariani-varprowlINDELD6_15HG002compoundhethet
22.6701
91.4720
12.9384
39.2155
7837380854375400
99.3195
jpowers-varprowlINDELD1_5HG002compoundhethet
35.3608
87.3843
22.1650
69.9316
1510218155054435389
99.0079
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
53.5870
96.7318
37.0581
53.6813
3167107318754135386
99.5012
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.4454
86.5913
34.6019
50.3848
2835439285553965373
99.5738
ciseli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
66.3810
65.0448
67.7731
41.7349
1596285781590575635364
70.9242
jpowers-varprowlINDEL*HG002complexvar*
91.1605
89.9127
92.4435
54.5762
6917777616894956365349
94.9077
eyeh-varpipeINDEL**het
96.2526
95.5711
96.9439
53.1169
185535859818493658305344
91.6638
jpowers-varprowlINDELD6_15HG002compoundhethet
21.3553
84.1121
12.2302
37.5281
72013674853685337
99.4225
ghariani-varprowlINDEL*HG002complexvar*
91.5434
91.6620
91.4251
69.4318
7052264157027365915330
80.8679
ciseli-customINDEL*HG002complexvarhomalt
81.7869
88.0268
76.3731
56.3608
2379132362355572875323
73.0479
egarrison-hhgaINDEL*HG002compoundhethet
60.4981
88.2511
46.0244
58.9093
3613481470655195300
96.0319
anovak-vgSNP*map_siren*
88.0035
90.6441
85.5124
59.7358
13254713681130863221715290
23.8600
ciseli-customINDELD6_15HG002compoundhet*
6.6832
5.5814
8.3271
39.0416
504852655460995283
86.6208
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.4171
52.9438
60.3781
34.2544
966785921031567695257
77.6629
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
85.6704
84.8021
86.5567
80.2451
3674965863720957795249
90.8289
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.2879
92.8692
93.7104
80.9504
8771467358818959195201
87.8696
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.3261
72.6018
82.7081
62.1191
474461790552604109985193
47.2177
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.3261
72.6018
82.7081
62.1191
474461790552604109985193
47.2177
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.2265
37.0781
43.9591
50.2516
41096973408652095192
99.6736
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.7592
95.7940
84.4397
65.4433
2919812823068256545190
91.7934
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.7592
95.7940
84.4397
65.4433
2919812823068256545190
91.7934
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
47.4490
43.8282
51.7219
54.7342
64808305651860845189
85.2893
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
54.7290
97.4954
38.0419
50.8575
319282319452025186
99.6924
ciseli-customSNPtiHG002complexvarhomalt
96.5088
99.0536
94.0915
19.4065
1916331831189105118755178
43.6042
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
85.7255
84.9037
86.5634
80.2326
3679365423745658145159
88.7341
ciseli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
50.1585
49.1836
51.1729
59.7079
78928154791975565150
68.1578
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
84.1642
83.2621
85.0860
71.1301
3155863443201756125145
91.6785
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.4593
77.1439
58.3743
42.1879
64771919937266835135
76.8367
ghariani-varprowlINDELI1_5HG002compoundhethet
21.0205
76.7059
12.1791
72.5111
65219872151995126
98.5959
ciseli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
82.0846
86.7638
77.8844
75.9358
41880638942785121495113
42.0858
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.2288
92.7559
93.7066
80.9569
8760768428825159275106
86.1481
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
44.7752
41.0011
49.3146
53.2015
56528133568458425100
87.2989
jpowers-varprowlINDELI1_5HG002compoundhethet
20.5402
73.6471
11.9344
70.4320
62622469150995074
99.5097
ndellapenna-hhgaINDEL*HG002compoundhethet
62.3220
85.8085
48.9296
57.3342
3513581505152725065
96.0736
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
64.5845
75.5146
56.4183
33.5145
55761808842165055048
77.6018
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
84.2914
83.4336
85.1671
70.9828
3162362793228656235042
89.6674