PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38651-38700 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 16 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m0_e0 | homalt | 98.2136 | 96.4899 | 100.0000 | 59.1024 | 3711 | 135 | 3709 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 41 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m1_e0 | homalt | 98.7629 | 97.5561 | 100.0000 | 57.4941 | 8822 | 221 | 8817 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 42 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m2_e0 | homalt | 98.7862 | 97.6015 | 100.0000 | 60.2310 | 8993 | 221 | 8987 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 43 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l100_m2_e1 | homalt | 98.7868 | 97.6027 | 100.0000 | 60.2358 | 9079 | 223 | 9073 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 9 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m0_e0 | homalt | 97.9085 | 95.9027 | 100.0000 | 66.3984 | 2130 | 91 | 2129 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m1_e0 | homalt | 98.4050 | 96.8601 | 100.0000 | 62.4454 | 5676 | 184 | 5673 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e0 | homalt | 98.4215 | 96.8921 | 100.0000 | 65.2969 | 5830 | 187 | 5827 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e1 | homalt | 98.4366 | 96.9213 | 100.0000 | 65.3352 | 5887 | 187 | 5884 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m0_e0 | homalt | 97.4517 | 95.0301 | 100.0000 | 73.1873 | 1262 | 66 | 1261 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m1_e0 | homalt | 98.3252 | 96.7055 | 100.0000 | 67.0155 | 3816 | 130 | 3814 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e0 | homalt | 98.3317 | 96.7181 | 100.0000 | 69.7502 | 3949 | 134 | 3947 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e1 | homalt | 98.3526 | 96.7586 | 100.0000 | 69.7328 | 4000 | 134 | 3998 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | map_l250_m0_e0 | homalt | 97.0667 | 94.3005 | 100.0000 | 91.7009 | 182 | 11 | 182 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m1_e0 | homalt | 97.8520 | 95.7944 | 100.0000 | 84.1085 | 820 | 36 | 820 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e0 | homalt | 97.9858 | 96.0512 | 100.0000 | 85.3349 | 900 | 37 | 900 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e1 | homalt | 98.0054 | 96.0888 | 100.0000 | 85.4327 | 909 | 37 | 909 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | segdup | het | 99.3783 | 99.7352 | 99.0240 | 94.2756 | 5273 | 14 | 5276 | 52 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | tech_badpromoters | het | 95.5224 | 96.9697 | 94.1176 | 64.2105 | 32 | 1 | 32 | 2 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | * | hetalt | 0.0000 | 3.4156 | 0.0000 | 0.0000 | 862 | 24375 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | HG002complexvar | hetalt | 0.0000 | 5.8394 | 0.0000 | 0.0000 | 216 | 3483 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 3.4114 | 0.0000 | 0.0000 | 859 | 24321 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9611 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.6088 | 0.0000 | 0.0000 | 138 | 3686 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.2940 | 0.0000 | 0.0000 | 662 | 14755 | 0 | 0 | 0 | ||